Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01224 ATGGCAGCCTCAGCTTCATCCATGATATCAACTTCTGCAGCCTTATCTGCCGCCATCCAAAAGCACCATGTTGTGAAGCCCTCCAACGTGTGCTTTCAGGGTCTGAGACCCCTCACAAGGTCCACAGGCTCAGCCAGAGTGAGTACCTCCAAAAGGGTCCCTCGTGGTAATGGTGTTGTGAAGGCTGAACTCAACTCAGCCCTCGTGATAAGCCTCAGCACTGGCCTCTCCCTCTTCTTGGGGAGATTTGTGTTCTTCAACTTCCAAAGGGAGAACGTGGCAAAGCAAGTCCCTGAGCAGAACGGGCTCACACACTTCGAGGCTGGTGACACACGTGCCAAGGAGTATGTCAGTCTCCTCAAATCCAATGACCCTGTTGGATTCAACATAGTTGATGTCTTGGCTTGGGGTTCCATTGGTCATGTTGTTGCTTACTACATCTTGGCCACCACAAGCAATGGCTATAATCCTGCATTCTTTTAA 483 0.5052 MAASASSMISTSAALSAAIQKHHVVKPSNVCFQGLRPLTRSTGSARVSTSKRVPRGNGVVKAELNSALVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHVVAYYILATTSNGYNPAFF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01224 160 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC-RELATED 23 160 IPR016370 -
Vian11g01224 160 NCBIfam photosystem I reaction center subunit V 69 156 IPR017494 GO:0009522|GO:0009535|GO:0015979
Vian11g01224 160 Pfam Photosystem I psaG / psaK 65 155 IPR000549 GO:0009522|GO:0015979|GO:0016020
Vian11g01224 160 PIRSF PsaK 1 160 IPR016370 -
Vian11g01224 160 Gene3D - 66 160 IPR023618 GO:0009522|GO:0015979
Vian11g01224 160 FunFam Photosystem I reaction center subunit V 66 160 - -
Vian11g01224 160 ProSitePatterns Photosystem I psaG and psaK proteins signature. 127 144 IPR000549 GO:0009522|GO:0015979|GO:0016020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01224 K08905 - gmx:100499718 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01224 11 20007364 20007846 Vian11g01224 11 20007364 20007846 ECH