Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01222 ATGAATGTGACAAATAAGCCAAACCCAGATGGTTCCACCAATGAGTTTCAGTCTCAGCTTCAACAGCAACACAGTAATGCTTGGGAGGGATCATCTACACGTCCACCCACTAAGCCTTATCCTGCACCAACGGCTAGCTACCAGGACATTGTTCGTGATGAAAACCTCTTCTGGGAAAAGCTCCAAGCTTTTCATCAATCACTTGGTACCAAATTTAAGTTGTCTGGTTTTAATGGGTTTGTTAGTTCCTTCAATCCTTCTTATTGGTTTTATAGTACATATGTTGTTCTCTGCTGTCTATGTTTTGCTCTTAGGATTGTTATTGTGGGAGGAAAGTCACTGGATCTACATCGCCTTTTTGTGGAAGTTACATCTCGGGGTGGGATTGAAAAGGTGATTATTGATCGTAAGTGGAAGGAAGTGATTCTGGCCTTCAATTTCAAAGATACCATAACGAGTGCATCATTTGTGGTGCGAAAATCCTATCTATCCATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCTTTCCTCCCCAAACACCTGATATTATGATTAGAGGCCAACCAGGCCTTTCCAATGGCTCCACAACCATTCTCGAGGTTACTGATGTGAATGATTCACCTGTTCAGGTTACTCCAGTTCAGGGATACGATGATGTGCTTTCTGGAACAATTGATGTGAAATTTGACGGTGGATACGTAGTCACAGTGACTGTGGGTTCTGAGGAGCTAAAAGGTGTCCTGTTTCATGTTCCAGATAACATGTCCCAGAGTTCTCATACGGAAGGCAATCCTAGCTCACAGAATCATGGTGAAGGCACATCTGGGTCACAGAGTCGAAAGAGAGCAAAATATACACCACGTGATCCATTCCGCCCGAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAGAATTATGCCATGCTGAAGCCCTCTTATCACGGGCAAGAGAGAGCTATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGGTGAAAGATAAGGAAAGATATAGAACTGAACTGATGGAATACAAATCCAACAATTCAACTCCAAATACTCAATAG 1122 0.4251 MNVTNKPNPDGSTNEFQSQLQQQHSNAWEGSSTRPPTKPYPAPTASYQDIVRDENLFWEKLQAFHQSLGTKFKLSGFNGFVSSFNPSYWFYSTYVVLCCLCFALRIVIVGGKSLDLHRLFVEVTSRGGIEKVIIDRKWKEVILAFNFKDTITSASFVVRKSYLSMLYHFEQVYYFGRQGFPPQTPDIMIRGQPGLSNGSTTILEVTDVNDSPVQVTPVQGYDDVLSGTIDVKFDGGYVVTVTVGSEELKGVLFHVPDNMSQSSHTEGNPSSQNHGEGTSGSQSRKRAKYTPRDPFRPKSNRSGYNFFFAENYAMLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGVKDKERYRTELMEYKSNNSTPNTQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01222 373 SUPERFAMILY HMG-box 296 367 IPR036910 -
Vian11g01222 373 ProSiteProfiles ARID domain profile. 51 174 IPR001606 GO:0003677
Vian11g01222 373 SMART hmgende2 296 365 IPR009071 -
Vian11g01222 373 MobiDBLite consensus disorder prediction 257 285 - -
Vian11g01222 373 MobiDBLite consensus disorder prediction 257 300 - -
Vian11g01222 373 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 297 364 IPR009071 -
Vian11g01222 373 SMART bright_3 85 175 IPR001606 GO:0003677
Vian11g01222 373 Pfam ARID/BRIGHT DNA binding domain 55 170 IPR001606 GO:0003677
Vian11g01222 373 MobiDBLite consensus disorder prediction 1 44 - -
Vian11g01222 373 Gene3D High mobility group box domain 280 372 IPR036910 -
Vian11g01222 373 Pfam HMG (high mobility group) box 297 364 IPR009071 -
Vian11g01222 373 SUPERFAMILY ARID-like 48 184 IPR036431 GO:0003677
Vian11g01222 373 MobiDBLite consensus disorder prediction 1 33 - -
Vian11g01222 373 CDD ARID_HMGB9-like 53 170 IPR045303 GO:0003677
Vian11g01222 373 Gene3D - 42 181 IPR036431 GO:0003677
Vian11g01222 373 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 17 370 - -
Vian11g01222 373 SMART ARID_2 48 170 - -
Vian11g01222 373 CDD HMG-box_AtHMGB9-like 297 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01222 Vian-Chr11 19994353 19997864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01222 45 372 ARID Transcription Factor Family AT3G13350 47.866 1.45e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vian11g01222 ARID 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01222 - - gmx:100793029 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01222 11 19994353 19997864 Vian11g01222 11 19994353 19997864 ECH