Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01213 ATGTCGGAGAGCGATCAGCGCCGTCTTCTGGGGCTGTCGGAGGATGACGTGGAAGCTCGAGGGTCGGAGTTGGCCGTCGTCAATGGCGGCGGCGGCATCAACAGCAACAACAAAGGTTTGAGGGATTTGTTAAGGTTGTCGGGTCACCGACAGAGTTTCAAGCGCATTGAGAAGGAAGAAGAGAGAGATAGAGACAGGGATAGAGATAGAAGGGAACAAAATCGGCATCATCACGATGTGGATCTTGATTCTTCTGTTGAGGTGCTTGGCGACAGTGCACCTCCTGAATGGGCGTTGCTACTCATTGGTTGCCTCATTGGACTCACAACTGGCCTCTTTGTTGCCTTTTTCAATAAAGGGTGTTATAATGGTGAATGGTGGAAGGCCACAATTCCTCCATATAAACATACCACTATGGCCTCCCTTCTCAAACTTGCTTTAGGTGATCTCAAGTTGGTATCAGAGCAGGTTCATCCTGCTCTGGTTTTTGTCCTGGGTTGTCCACCAGCACTGTCACTGCTGTTTGCACCTGTTCGGTGCCGTTCGCCGTTGTCCGCGGCTGTCTCGCCACTATCTGCAGCTGTGCATATAATACATGAATGGGTATGGGCTGGTACTCCAATTGAGGGTGCTGCCTGGCTTCGTATTCAGAGATTGGCTGATACATGGCATCGAATCCTTTTAATACCTGTCACTGGAGGAGTCATTGTCGGAATGATGTGTGGTTTACTGGAAATACTGGACCAAATAAAGCAATCCACTGCCTCTCAAACACAAGGTTTTGATTTTCTTGCAGGAATCTTTCCGACAATAAAGGCTATTCAGGCTGCAGTTACTTTAGGTACTGGCTGTTCATTGGGGCCTGAAGGTCCTAGTGTTGATATTGGGAAGTCATGTGCCAACGGATTCTCACTAATGATGGAACACAACAGAGAAAGGAAAATAGCACTTGTTGCAGCTGGTGCAGCGGCTGGAATTTCGTCAGGCTTCAATGCACCAGTTGCTGGTTGTTTCTTTGCTATTGAAACTGTGCTGAGGCCTCTCCGAGCAGAGAACTCTCCTCCATTTACAACTGCCATGATTATACTGGCTTCTGTTATCTCATCAACTGTATCAAATGTTTTACAGGGGATCAAATCAGCTTTCACAATACCCGAGTATGATTTGAAATCTGCTGCTGAGCTACCTCTATACCTGATATTGGGAATGCTTTGTGGTGTTATAAGTGTGGCCATGACTCGTTTGGTTGCTTGGTTCACCAAATTTTTTAAGTTTATTCAGGATAAGTTCGGCATTCCTACTGTGGTCTGCCCTGCTTTAGGTGGTTTCGGAGCTGGGATTATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTTTACGTACTGGAAAGAGTGCTTCAGCTCCTGGAATATGGCTTCTAACTCAATTGGTAGTTTCTAAGGTCATTGCAACAGCTCTTTGCAAGGGATCTGGGCTAGTTGGTGGTCTTTATGCACCAAGTTTAATGATAGGTGCTGCAGCAGGTGCTGTATTTGGAGGCTTTTCCGCTGAAGTTATTAATTCAGCAATTCCTGGAAATGCTGCTGTTGCTCAGCCCCCGGCATATGCTCTGGTTGGAATGGCGGCTACATTAGCATCTGTTTGTTCTGTTCCTTTGACTTCAGTTCTACTTCTGTTCGAGCTGACAAAAGATTATAGGATACTGCTTCCCCTCATGGGAGCTGTTGGATTGGCAATATGGGTTCCTTCAGTGACAAACCAGGCGAAGGAGAGTGATACACCCGATGCAAGTAGCTCATTACGAGGATATTCTCCAGTTTCACATGCTGGAGATGATAATGAGGGTAACTGGAGACAAGTCAATGATGGGAATGATTTAGAGCTCCATATTGTTGGGGATGGCGCTGATCTTGAAACAACTGACAAGGAACTTCTTCTGGACAATCTTCAGGTTGAGAAAAGATTTTTCGCATTTCCTTTTGATGATTGCCATTGTCCATCTTTTGCTGATAACTGTGTTTCCCAGGCAATGTCAAAACAATATTGTAAGGTTTTGTCATCTGCAATCTTGAAAGATGCAATAAAATTGATGCATGACAGCCAGCAGAATTGTGTGCTGGTAGTTGATAAAGAAGATTTTCTAGAAGGAATATTGACATATGGTGACATAAGAAGGTGTCTGTCTCAGGAGTCTCATGACACTTTGAAGAGTGGTTTAGTGGTTGTGGATTCAAACACATGCCTTGTTTCCTCTGTTTGTACTCGAGGGATGAGCTATCGTGGACGAGAGCGAGGAATTTTGACCTGCTATCCAAATACTAGTTTGGCTATGGCCAAAGAGTTGATGGAAGCCAAGGGCATTAAGCAATTACCAGTGGTTAAACGTGGTGGAGATCAGAGTAGAGAAAGAAAAAGGAGAATTGTTGGTCTTCTTCATTATGATGCACTATGGCATTGTCTCAGGAAAGAGATTAATCACAGGCAAACAGCCTATCAAAATATGACAGATAACAGTTTGGCAGTGACAACAACAAATGGTCATTAA 2568 0.4451 MSESDQRRLLGLSEDDVEARGSELAVVNGGGGINSNNKGLRDLLRLSGHRQSFKRIEKEEERDRDRDRDRREQNRHHHDVDLDSSVEVLGDSAPPEWALLLIGCLIGLTTGLFVAFFNKGCYNGEWWKATIPPYKHTTMASLLKLALGDLKLVSEQVHPALVFVLGCPPALSLLFAPVRCRSPLSAAVSPLSAAVHIIHEWVWAGTPIEGAAWLRIQRLADTWHRILLIPVTGGVIVGMMCGLLEILDQIKQSTASQTQGFDFLAGIFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEHNRERKIALVAAGAAAGISSGFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGIKSAFTIPEYDLKSAAELPLYLILGMLCGVISVAMTRLVAWFTKFFKFIQDKFGIPTVVCPALGGFGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLTQLVVSKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEVINSAIPGNAAVAQPPAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNQAKESDTPDASSSLRGYSPVSHAGDDNEGNWRQVNDGNDLELHIVGDGADLETTDKELLLDNLQVEKRFFAFPFDDCHCPSFADNCVSQAMSKQYCKVLSSAILKDAIKLMHDSQQNCVLVVDKEDFLEGILTYGDIRRCLSQESHDTLKSGLVVVDSNTCLVSSVCTRGMSYRGRERGILTCYPNTSLAMAKELMEAKGIKQLPVVKRGGDQSRERKRRIVGLLHYDALWHCLRKEINHRQTAYQNMTDNSLAVTTTNGH 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01213 855 Gene3D - 672 827 IPR046342 -
Vian11g01213 855 Pfam CBS domain 773 820 IPR000644 -
Vian11g01213 855 Pfam CBS domain 681 735 IPR000644 -
Vian11g01213 855 MobiDBLite consensus disorder prediction 596 612 - -
Vian11g01213 855 SUPERFAMILY Clc chloride channel 95 593 IPR014743 -
Vian11g01213 855 CDD Voltage_gated_ClC 191 586 - -
Vian11g01213 855 ProSiteProfiles CBS domain profile. 770 837 IPR000644 -
Vian11g01213 855 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 190 661 - -
Vian11g01213 855 SUPERFAMILY CBS-domain pair 681 833 IPR046342 -
Vian11g01213 855 Pfam Voltage gated chloride channel 264 589 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian11g01213 855 ProSiteProfiles CBS domain profile. 685 742 IPR000644 -
Vian11g01213 855 MobiDBLite consensus disorder prediction 596 626 - -
Vian11g01213 855 FunFam Chloride channel protein 178 605 - -
Vian11g01213 855 PRINTS Chloride channel signature 323 342 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian11g01213 855 PRINTS Chloride channel signature 559 578 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian11g01213 855 PRINTS Chloride channel signature 500 520 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian11g01213 855 PRINTS Chloride channel signature 541 557 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian11g01213 855 PRINTS Chloride channel signature 272 291 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian11g01213 855 MobiDBLite consensus disorder prediction 55 78 - -
Vian11g01213 855 CDD CBS_pair_voltage-gated_CLC_euk_bac 685 825 - -
Vian11g01213 855 SMART cbs_1 773 829 IPR000644 -
Vian11g01213 855 SMART cbs_1 688 736 IPR000644 -
Vian11g01213 855 Gene3D Clc chloride channel 183 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01213 Vian-Chr11 19852956 19870229 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01213 K03281 - gmx:100787625 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01213 11 19852956 19870229 Vian11g01213 11 19852956 19870229 ECH