Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01204 ATGAAAAGAGCGAAACCATACCTCAGGAGGAACATGTCGTGGTCACCAACACTAGTAATTACCTCCCTTCTTCTGATTGCCTTATTCGTTGCAGTAACAACAGCAGAAGCAGAATCAGAACCGGCATCAACCTCCGATGCGAATCTCCTCATCCGCTTCAAGCAGTTCCACGTTTCCTCCGACCCCCGCGGCTTCCTCTCCGATTGGCTCCCCGACGCGCCGTCCCCGTGCGCGTGGCGCGGCGTTACCTGCTCGCCCCAGCCACCCCGCGTCACCGCCATCGACCTCTCCGGCGCCTCCCTCTCCGGCACCCTCCACCTCCCCACCCTCACATCCCTCCCCTCGCTAAGCACCCTCGTCCTACGTGGCAACTCCTTCTCCGCTTTCAACCTCAGCGTTTCGCCGTTTTGCACGCTTCAAACACTCGACCTCTCTTTCAACAACTTCTCCGGCAAGTTTCCTTTCGCAAACCTAACTCCGTGTAACCGCCTCACTTACTTAAACCTCTCCAATAATCTCATCACCGCTGGGCTCGGCCTTGGGCCTGACTCTGGGCTTTCCCTGGCCCAACTCGACTTGTCCAGAAACCTCGTCTCCGACGTGAGCCTTCTCGTGTCCTCTCTCGCGAGCTCCGCTCTCGTTTATCTGAACTTCTCCAACAACAGACTCACGGGTCAACTCGGCGAGTCGCTCGTTTCGCGAAGCGCGAACCTCTCCACCTTGGACCTCTCCCACAATCTTCTCTCTGGGGCGGTGCCGCCTCGGCTCGTGAATGACGCCGTTCAGGTTCTCGATTTCTCGTTCAACAACTTCTCGCGGCTGGATTTCTCCTCGTGCGGTAGCCTAACGCGGTTGAGCTTCTCGCGCAATGCGCTCTCCGGAGAAGAGTTTCCGCGCGGGTTGAGCAGCTGCAACAGGCTCGAGGTTCTGGATCTTTCTCGCAATGAGTTTGAAGCCGAGATTCCCGGGGAGATTCTTCGGAGTTTGAGGAGCTTGAAGTCTTTGTTTCTCGACCGCAACAAATTCTTCGGCGAGATTCCGAGCGAGCTCGGAAGCCTCTGCGGAAGTCTCGTGGAGCTTGATCTCTCCGAGAACATGCTTTCTGGTGCGTTGCCTTTGAGCTTCGTGAACTGTTCTTCCATGCTGAGTTTGAACCTTGCGAGGAACTATTTCTCTGGGAACTTCCTCGTGTCCGTGGTTAGCAACCTTCAGAGTCTTGAGTATCTAAACGTGGCGTTTAATAACATAACGGGACAGGTTCCGTTTTCGCTTGTTAACCTGAAACGGCTTCGGGTGCTTGACTTGAGCTCGAACCGGTTAAACGGCAATGTTCCGTCGTTCTTTTGCCCTTCCGAGCTGGAGAAGTTGATCCTTGCGGGCAATTACCTTTCCGGGACGGTGCCGTCACAGCTCGGTGATTGTAAGAATTTGAGAACCGTTGATTTCAGCTTTAACAGCTTGAACGGTTCGATTCCGTGGGAGGTTTGGGCTTTGCCTAACCTCTCTGATTTGATTATGTGGGCGAATAATCTCACTGGGGAAATCCCAGAAGGAATTTGTGTTAAAGGAGGGAACTTGGAGAATTTGATTCTCAACAATAACTTCATTTCTGGGTCAATTCCGAAGTCAATTGCCAATTGCACCAACATGATATGGGTGTCGCTGGCGAGCAACCGGTTAACCGGAGCGATACCTTCTGGGATTGGGAAATTGAACGTATTGGCGATTCTCCAGCTTGGGAACAACTCGCTGAGTGGGAGGATTCCACCGGAGATAGGCAAGTGTGGGAAGTTGATATGGTTAGATTTGAATAGCAATAACCTAACTGGGAATATCCCGTTTGAGCTTGCTGATCAAGCGGGACTGGTTATCCCGGGCAAGGTTTCAGGGAAGCAGTTTGCGTTTGTGAGGAACGAGGGTGGGACTAGTTGCAGGGGTGCTGGTGGGTTGGTTGAGTTTGAGGATATCAGAACAGAGAGACTTGAAGGTTTTCCCATGGTGCATTCGTGCCCATTGACGCGGATTTACTCCGGTTGGACCGTGTATACTTTTTCTTCCAATGGGAGCATGATCTACCTTGACCTTTCCTACAACTTGCTGTCTGGGACTATTCCTGGGAATTTGGGTGGCATGGCCTATTTGCAGGTGTTGAATATGGGGCACAATAGGCTGAGTGGGAACATTCCAGATAGTTTTGGTGGTTTGAAAGTAATTGGGGTGCTTGATCTGTCACATAACAGTCTTAATGGGTCCATCCCTGGTTCATTGCAGAGCCTTTCTTTTCTCAGTGACCTTGACGTCTCTAATAATAATCTCACCGGGTCCATTCCTTCTGGAGGTCAGTTGACTACTTTTCCAGCTTCTAGATACGAGAACAACTCTGGCCTTTGCGGCCTGCCGCTGCCATCGTGTAGTGCTTCGAAGAACCGCTCAGTGGGTGTTGTGGTTTGGAAGAAGAAGCAGCCTGTAGCAGCTGGGGTTGTCATTGGTTTGCTTTGCTTCCTCTTGTTTGCGCTTGGGCTTGTGTTGGCTTTGTACAGGGTGAGGAAGGCTCAGAAGAAGGAGGAGATTAGAGAAAAGTATATAGAGAGTCTTCCCACTTCGGGGAGCAGTAGTTGGAAGATTTCCAGCTTTCCTGAGCCTCTGAGCATCAATGTTGCCACCTTTGAGAAGCCTCTGCGGAAGCTGACTTTCGCACATCTTCTCGAGGCTACTAATGGTTTCAGTGCTGAGAGTTTGATCGGCTCTGGGGGATTTGGTGAAGTGTACAAGGCTAAACTCAAAGATGGCTGTGTTGTTGCCATCAAGAAGCTCATTCATGTGACGGGTCAGGGAGATAGGGAGTTCATGGCTGAGATGGAAACTATTGGGAAGATTAAGCATAGGAACCTGGTTCAGCTGCTGGGTTACTGTAAAGTTGGGGAGGAGAGGCTTCTTGTGTACGAGTTCATGAAATGGGGAAGTCTTGAGGCTGTTTTACATGAAAGGGCAAAAGGAGGAGGTTCAAATCTTGATTGGGGTGCAAGAAAGAAGATTGCCATAGGAAGGCCAATCGACTCTTCCGAGTTTGGTGATGACAACAATCTTGTTGGTTGGTCTAAGAAGCTTTACAAAGAGAAGAGAATTAATGAAATACTTGATCCTGATTTAATTGTGCAATCATCTAGTGAAAGTGAACTATTTCAGTATTTGAGAATTGCCTTTGAGTGTCTAGATGAGAGGCCCTACCGTCGGCCGACCATGATACAAGTGATGGCCATGTTCAAAGAGCTTCAGGTTGACACAGATAATGATACGCTTGATAGCTTCTCTCTGAGAGACAGTTTCATTGATGAAGCATGA 3342 0.5027 MKRAKPYLRRNMSWSPTLVITSLLLIALFVAVTTAEAESEPASTSDANLLIRFKQFHVSSDPRGFLSDWLPDAPSPCAWRGVTCSPQPPRVTAIDLSGASLSGTLHLPTLTSLPSLSTLVLRGNSFSAFNLSVSPFCTLQTLDLSFNNFSGKFPFANLTPCNRLTYLNLSNNLITAGLGLGPDSGLSLAQLDLSRNLVSDVSLLVSSLASSALVYLNFSNNRLTGQLGESLVSRSANLSTLDLSHNLLSGAVPPRLVNDAVQVLDFSFNNFSRLDFSSCGSLTRLSFSRNALSGEEFPRGLSSCNRLEVLDLSRNEFEAEIPGEILRSLRSLKSLFLDRNKFFGEIPSELGSLCGSLVELDLSENMLSGALPLSFVNCSSMLSLNLARNYFSGNFLVSVVSNLQSLEYLNVAFNNITGQVPFSLVNLKRLRVLDLSSNRLNGNVPSFFCPSELEKLILAGNYLSGTVPSQLGDCKNLRTVDFSFNSLNGSIPWEVWALPNLSDLIMWANNLTGEIPEGICVKGGNLENLILNNNFISGSIPKSIANCTNMIWVSLASNRLTGAIPSGIGKLNVLAILQLGNNSLSGRIPPEIGKCGKLIWLDLNSNNLTGNIPFELADQAGLVIPGKVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPLTRIYSGWTVYTFSSNGSMIYLDLSYNLLSGTIPGNLGGMAYLQVLNMGHNRLSGNIPDSFGGLKVIGVLDLSHNSLNGSIPGSLQSLSFLSDLDVSNNNLTGSIPSGGQLTTFPASRYENNSGLCGLPLPSCSASKNRSVGVVVWKKKQPVAAGVVIGLLCFLLFALGLVLALYRVRKAQKKEEIREKYIESLPTSGSSSWKISSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVQLLGYCKVGEERLLVYEFMKWGSLEAVLHERAKGGGSNLDWGARKKIAIGRPIDSSEFGDDNNLVGWSKKLYKEKRINEILDPDLIVQSSSESELFQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTDNDTLDSFSLRDSFIDEA 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01204 1113 FunFam serine/threonine-protein kinase BRI1-like 2 869 983 - -
Vian11g01204 1113 SUPERFAMILY L domain-like 681 801 - -
Vian11g01204 1113 FunFam Serine/threonine-protein kinase BRI1-like 1 628 685 - -
Vian11g01204 1113 Gene3D - 628 685 - -
Vian11g01204 1113 Pfam Leucine Rich Repeat 331 345 IPR013101 -
Vian11g01204 1113 Gene3D Phosphorylase Kinase; domain 1 871 983 - -
Vian11g01204 1113 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 452 624 - -
Vian11g01204 1113 SUPERFAMILY Protein kinase-like (PK-like) 893 1014 IPR011009 -
Vian11g01204 1113 Pfam Leucine Rich repeat 137 151 IPR001611 GO:0005515
Vian11g01204 1113 Pfam Leucine Rich repeat 403 418 IPR001611 GO:0005515
Vian11g01204 1113 SUPERFAMILY RNI-like 325 614 - -
Vian11g01204 1113 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 400 1015 - -
Vian11g01204 1113 SUPERFAMILY L domain-like 57 393 - -
Vian11g01204 1113 ProSitePatterns Protein kinases ATP-binding region signature. 914 937 IPR017441 GO:0005524
Vian11g01204 1113 Pfam Leucine rich repeat N-terminal domain 45 85 IPR013210 -
Vian11g01204 1113 Pfam Leucine Rich Repeat 714 735 IPR001611 GO:0005515
Vian11g01204 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 683 804 - -
Vian11g01204 1113 PRINTS Leucine-rich repeat signature 238 251 - -
Vian11g01204 1113 PRINTS Leucine-rich repeat signature 427 440 - -
Vian11g01204 1113 Gene3D Transferase(Phosphotransferase) domain 1 1011 1104 - -
Vian11g01204 1113 Pfam Brassinosteroid receptor island domain 621 685 IPR045381 -
Vian11g01204 1113 Pfam Protein tyrosine and serine/threonine kinase 911 997 IPR001245 GO:0004672|GO:0006468
Vian11g01204 1113 ProSiteProfiles Protein kinase domain profile. 908 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01204 1113 Gene3D Ribonuclease Inhibitor 186 805 IPR032675 -
Vian11g01204 1113 SMART LRR_typ_2 113 136 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 403 426 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 236 259 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 759 782 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 427 450 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 354 377 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 329 353 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 498 522 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 279 304 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 711 734 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 306 328 IPR003591 -
Vian11g01204 1113 SMART LRR_typ_2 571 595 IPR003591 -
Vian11g01204 1113 Gene3D Ribonuclease Inhibitor 45 159 IPR032675 -
Vian11g01204 1113 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 273 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01204 Vian-Chr11 19741439 19745062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01204 1016 1112 Receptor kinase-like Gene Family AT1G55610 60.204 4.43e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vian11g01204 PK_Tyr_Ser-Thr 4.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01204 - - gmx:102670093 1562.36