Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01181 ATGAATAGTTTTTCTCATGTTCCCCCGGGTTTTAGGTTCCACCCCACTGATGAGGAACTTGTTGACTACTATCTGAGGAAGAAAGTTACCTCAAGAAGGATTGACCTAGATGTCATAAAAGATGTTGACTTATATAAAATTGAGCCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAGCAGAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACAGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAGGCAACTGGAAGAGACAAAGCTATCTATTCAAAGCATGACTTGATAGGAATGAGGAAAACCCTAGTCTTTTACAAAGGTCGAGCACCCAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCACACCACAGGCAAAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGAGCAAGTCTCTTTCATGCAAGACATGGATTCACCAAAGCAAAGCTCTCAACCTAATAATTTGCCCTACCAGTTTCCATATCCATGCAAGAAAGAGCTAGATTTGCCATACCATTTGCCTCTCCAGCTTCCATTGGAGAACCAAAAGCTGCTTCAATCTGCCTCCAACTCAATAACACCGTATGCTGTAGTAGAACAAAACCATGTCATGCACCAAGTTCAACACTCAATCATGCAGCAAGTTCAACACTCTGCTCAGCAGCAAAATTTTCAGGCAGTGTTTGGAAACAATGCCAATGAACAAGTGGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAGCTCAGTCAGGAAGATGCACCCAAAGAGAACAGTTTCTCAAACACAGGCACCAACAACAACATGTTTCATGTGAAGAACAATAGCAACATTGAACAGTTGGGAGACATGGACAAGGAGGAAATGATGCCTGAAAATGCCTCAACTTCAAACTCAAGCTGTCCAATTGACATGTGGAAATAG 1047 0.4183 MNSFSHVPPGFRFHPTDEELVDYYLRKKVTSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQAKGWVVCRVFKKRLTTMRKLSEHDSPCWYDEQVSFMQDMDSPKQSSQPNNLPYQFPYPCKKELDLPYHLPLQLPLENQKLLQSASNSITPYAVVEQNHVMHQVQHSIMQQVQHSAQQQNFQAVFGNNANEQVADWRALDKYVASQLSQEDAPKENSFSNTGTNNNMFHVKNNSNIEQLGDMDKEEMMPENASTSNSSCPIDMWK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01181 348 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vian11g01181 348 MobiDBLite consensus disorder prediction 292 313 - -
Vian11g01181 348 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Vian11g01181 348 FunFam NAC domain-containing protein 16 160 - -
Vian11g01181 348 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vian11g01181 348 MobiDBLite consensus disorder prediction 290 313 - -
Vian11g01181 348 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vian11g01181 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01181 Vian-Chr11 19169655 19171407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01181 1 348 NAC Transcription Factor Family AT1G12260 57.222 7.66e-135 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian11g01181 NAM 4.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01181 - - gmx:100775867 593.578