Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01178 ATGGAGCTGAAGCCAAATCTTACTCCAGTCCTTACTGATGCCGCACCCTTGACAAGGTCAAGGCTGGGTGTGTCTTCTGGTTTGTCACCTTACTCTTCTCCAAAAGGGGCAACCTTTCCCCATCATGGTCCCTTTCTGTCTATTCCAAGGAAGAAGACAGGAATTCTTGATGATTTTCGTTCTAGCGGTTGGCTTGATGCCATGAAATGTTCTTCTCCTACTCGCAATAAAGTATCCAAGGATCTCAATCATGGAATTGGATCACATGATGCTGCTTATAGTACCTGGCTGCTAAAGTTTCCATCAGCACTTGCATCTTTTGATCAAATTACTAACTGTGCAAAAGGGAAGAAAATAGCATTATTTCTTGATTATGATGGGACTCTTTCACCCATTGTGGACAATCCTGACTGTGCGTTTATGTCAGATAATATGCGTGCTGCTGTTAAAAAAGTCGCGGAATATTTTCCAACTGCAATAATCAGTGGAAGAAGACGTGACAAGGTATATGAATTTGTTGGATTAAGTGACCTCTATTATGCTGGTAGTCATGGGATGGACATTATTGGTCCTCCCAGACAATCTATTTCTGATGATCACCCTGATTCTGATAAGAAGGGTCTTGGTGAACTTAATTTATTCCAACCTGCTGCTGAATTCCTTCCCATGATTGATGAGGTACGTAGGTTGCTCAAGGAGTGTACAAAAGACATTGAAGGAGCAACAGTTGAGAACAATAAATTTTGTGCATCTGTACATTACCGGAATGTAGATGAGGAGAATTGGCATATTGTGGGACAACGTGTATATGATGTTTTGAAGGGGTATCCTCGTTTGCGTTTAACTCATGGGCGGATGGTTTTAGAGGTTCGGCCAGTGATTGACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCACTTGGACTCGGCAATCGCGATGACGTGCTAACAATATATGTTGGAGATGATAGAACAGACGAAGATGCCTTTAAGGTTTTGAGAGAAGCTAATAAAGGTTGTGGCATCTTAGTGTCCCCTTCCCCAAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCCTCAGAGGTCATGGAATTTCTGACATCACTTGCTGTATGGAAATCAAGCATTCAAGCTCGCTGA 1149 0.4221 MELKPNLTPVLTDAAPLTRSRLGVSSGLSPYSSPKGATFPHHGPFLSIPRKKTGILDDFRSSGWLDAMKCSSPTRNKVSKDLNHGIGSHDAAYSTWLLKFPSALASFDQITNCAKGKKIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRRRDKVYEFVGLSDLYYAGSHGMDIIGPPRQSISDDHPDSDKKGLGELNLFQPAAEFLPMIDEVRRLLKECTKDIEGATVENNKFCASVHYRNVDEENWHIVGQRVYDVLKGYPRLRLTHGRMVLEVRPVIDWDKGKAVTFLLESLGLGNRDDVLTIYVGDDRTDEDAFKVLREANKGCGILVSPSPKESNAVYSLRDPSEVMEFLTSLAVWKSSIQAR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01178 382 Gene3D - 210 381 IPR023214 -
Vian11g01178 382 Gene3D - 119 209 IPR023214 -
Vian11g01178 382 NCBIfam HAD-IIB family hydrolase 121 337 IPR006379 -
Vian11g01178 382 Coils Coil 224 244 - -
Vian11g01178 382 FunFam Trehalose 6-phosphate phosphatase 223 382 - -
Vian11g01178 382 SUPERFAMILY HAD-like 120 374 IPR036412 -
Vian11g01178 382 Pfam Trehalose-phosphatase 122 363 IPR003337 GO:0003824|GO:0005992
Vian11g01178 382 NCBIfam trehalose-phosphatase 116 373 IPR003337 GO:0003824|GO:0005992
Vian11g01178 382 CDD HAD_TPP 120 367 - -
Vian11g01178 382 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 30 380 IPR044651 GO:0004805|GO:0005992
Vian11g01178 382 FunFam Trehalose 6-phosphate phosphatase 119 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01178 Vian-Chr11 19135265 19138171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01178 115 373 Trehalose Biosynthesis Gene Families AT1G70290 25.000 7.75e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01178 K01087 - gmx:100783008 671.389