Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01171 ATGGAAAAAATTCTGGAAGCAGATGCAAATACTGTATCTCAGCGTTCCTCATCTTCTTCAGTTGTTGCTTTGGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTGAATAAGTTTGTTCCCGAGGGAATGATTATCTTCAAGCTGATACATGTTCATGCTACTATAAAAGGAGTTCCAACGCCATTGGGAAATGTGATCCCTCTTTCACAAGTGCGTAATGATGTAGCAACTGCATTCAAAAAGGAAGTGGAGTGGCAAACAAACCAAATGCTGCTACCTTTCAAGAGATTGTGTGAGCAAAGAAAGGTGCATGTGGATGTTGTACTGATTGAATCAGATGATGTGGCTATTGCAATAGCAGAGGAAGTGGCTAAGGGTGCTATCACCAAACTTGTTGTTGGAGCTTCATCTCGTGGCATATTTAAAAGTAAACAGAAGGGTATATCTATGAAAATATCAGTAAGCACTCCAAGATTTTGCACAGTTTATGCTATTTCGAAGGGAAAATTGTCCATACGACAGTCAGACATTCCTATTGATGGAAGCATTGTAGATGATGCTAGTGAAACCAGTTTGTCTTCCAGCAGCTCATCTAACTACACTTCCACCTCTCAGACAGAATCTGCCTCAGTTTCATCATATGCTGGTTTACACTCGTCTTCCCTAGCAACACAACGATTTCAAGCTCTTTCAAGTATAAATAGTGCACTTCTAAGCACAAATCCGAGTTTAAGTGACACTAGCCATTCTAGAGGCCAATCTCTAGATTTTGGGAGAGAAAATACTGCTACCAGCTCTGCCAGAAACTCAGACATTGATCATACCTTAAGTCGAGTCTCTAGTTGCAAAAGCTTTATTTCTGATACTGAATCTTGGATGTATGATCAAAATTCTATAAAGGATGTGCCACTAGCAACTACACTTCCATCACCTAATAGGCAGGCAAAATTGAACCTTGAGCTGGAAAAGTTGAGAATTGAGCTAAGACATGTCCAAGGACTTCATGCAGTAGCTCAAAGTGAGAAAGTTGAAGCATCCCGGAAGCTGAATGACCTTAGCAAGAAACGGTCAGAAGAAAGCATAAAAATGAAGGAGATTATTGCTAAGGAGGAGAAGGCAAAAGAATTTGCAAAACTAGAAATAGAGAAATATCAGGATGCCTCCAGAGAAGCTGTATATATGAAAGAATGTGCTGAAAGGGAGGCTGTGGAAAGGAAAGAAACAGAGATGAAAGTGATCCGTGCCACAAAAGAGAAAGAAAAGTTGGAAGATGCTCTTAGTGGTAATATACTACAGTACCGGAAGTTTACATGGGCTGAAATAGTCTCAGCTACTTCATCTTTTTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAACAGTGTACAAGTGTAATTTGTATCACACAACTGTTGCCGTTAAAGTTCTCAACACTAATGGAAATCGTGAAAGCAAGCAATTCCAACAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTGCTTCTTCTGGGTGCATGTCCTGATCATGGATGTCTTGTATATGAATATATGGAGAACGGTAGCCTGGAAGACAGACTGCTGAGAAAAAACAACACATGCCCAATCACATGGTTTGAGAGATTTCGAATAGCTTGGGAAATTGCATCAGCTCTTGCCTTTCTTCACAGCTCAAAGCCAGAACCTATCATTCATCGGGACTTAAAACCAGCAAACATCTTGCTTGGTCGAAACCTTGTCAGCAAGATTGGTGACATTGGACTTAGTACAGTACTCCATTCCGATAATTTATCTACCATGTACAAGGACACAGCACCTGTTGGGACACTCTGCTACATTGATCCTGAGTATCAAAGGACTGGGTTAATATCTCCAAAATCTGATGTCTATGCTTTTGGAATGGTGATCCTACAACTATTGACAGCAAAACCAGCAATAGCACTTGCTCATAAGGTTGAAACTGCAATTGAAGGTGGGAATTTGACAGATATATTGGATCCAGAGGCAGGAGCTTGGCCATTTAAAGAGACACTAGATTTGGCTTTGTTGGGAATGAGCTGTGCAGAACTTCGGCGTAGAGACCGGCCTGATTTAAAAGATCAAGTGCTTCCAATACTTGACAGATTAAAAGAAGTTGCTGATAGGGCCCAACACTCTGCTTCAACTGTTACTATTAAATCCAAACCTCCTAATCACTTTATCTGTCCAATTCTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCTGATGGATATACGTACGATCGCAAAGCAATTGATAAGTGGCTTGAAGAGAACGACAATTCACCAATGACAAACATAGCTTTACCTCACAAGCATTTAATTCCTAATTACACACTTTTGTCAGCAATTTTGGAGTGGAAGTCCGCAGAATCATGA 2424 0.4059 MEKILEADANTVSQRSSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVHATIKGVPTPLGNVIPLSQVRNDVATAFKKEVEWQTNQMLLPFKRLCEQRKVHVDVVLIESDDVAIAIAEEVAKGAITKLVVGASSRGIFKSKQKGISMKISVSTPRFCTVYAISKGKLSIRQSDIPIDGSIVDDASETSLSSSSSSNYTSTSQTESASVSSYAGLHSSSLATQRFQALSSINSALLSTNPSLSDTSHSRGQSLDFGRENTATSSARNSDIDHTLSRVSSCKSFISDTESWMYDQNSIKDVPLATTLPSPNRQAKLNLELEKLRIELRHVQGLHAVAQSEKVEASRKLNDLSKKRSEESIKMKEIIAKEEKAKEFAKLEIEKYQDASREAVYMKECAEREAVERKETEMKVIRATKEKEKLEDALSGNILQYRKFTWAEIVSATSSFSEDLRIGMGAYGTVYKCNLYHTTVAVKVLNTNGNRESKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLLRKNNTCPITWFERFRIAWEIASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIEGGNLTDILDPEAGAWPFKETLDLALLGMSCAELRRRDRPDLKDQVLPILDRLKEVADRAQHSASTVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIDKWLEENDNSPMTNIALPHKHLIPNYTLLSAILEWKSAES 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01171 807 Pfam Protein kinase domain 456 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01171 807 Gene3D HUPs 8 153 IPR014729 -
Vian11g01171 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 737 807 IPR013083 -
Vian11g01171 807 Pfam U-box domain 738 805 IPR003613 GO:0004842|GO:0016567
Vian11g01171 807 ProSiteProfiles U-box domain profile. 736 807 IPR003613 GO:0004842|GO:0016567
Vian11g01171 807 ProSiteProfiles Protein kinase domain profile. 453 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01171 807 CDD RING-Ubox_WDSUB1-like 738 792 - -
Vian11g01171 807 Gene3D Transferase(Phosphotransferase) domain 1 526 736 - -
Vian11g01171 807 SUPERFAMILY RING/U-box 735 804 - -
Vian11g01171 807 SMART serkin_6 453 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01171 807 SMART Ubox_2 740 802 IPR003613 GO:0004842|GO:0016567
Vian11g01171 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Vian11g01171 807 MobiDBLite consensus disorder prediction 246 278 - -
Vian11g01171 807 ProSitePatterns Protein kinases ATP-binding region signature. 459 480 IPR017441 GO:0005524
Vian11g01171 807 CDD STK_N 23 173 - -
Vian11g01171 807 PANTHER OS02G0152300 PROTEIN 21 801 - -
Vian11g01171 807 Gene3D Phosphorylase Kinase; domain 1 420 525 - -
Vian11g01171 807 Coils Coil 408 430 - -
Vian11g01171 807 SUPERFAMILY Protein kinase-like (PK-like) 436 707 IPR011009 -
Vian11g01171 807 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 24 148 - -
Vian11g01171 807 Coils Coil 340 360 - -
Vian11g01171 807 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01171 Vian-Chr11 19033543 19040740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01171 19 804 U-box Gene Family AT4G25160 52.862 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vian11g01171 Pkinase 2.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01171 - - gsj:114409387 1340.48