Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01160 ATGGAGATGGAGAGGTACACCAGTCAGCGGTGGAGACCTACTGACGATCAGGTCAAAATGATGACCAATATCTACAACCATGGGGTCACACATCCCAGCCGCGCGCAAGTCGTCGAGATCGCGTCTCGACTAAGGACCTTCGCAGACGCTAGCGAATACAACGTCCACTGTTGGTTCAACAACCACGGCAATCGGATCAGGCGCTGGCAAGCGGAGATGGACCCTACTGGCACTCTCTTCTCGCAACTGCCGCTATACATGTATGTAACACAATTTTTTTTGGAAGAATATGGTTGGGTAATTATGAGGGCGCCGAGGCTGCTGGACTTGTTCCCCATTCCGATCATCATCGACGACGACAGGGACGAACGCCAAATCCCTCTACCCATGCCTCTCGCATTCCGAACCAGAGCTCCCTCGACGGAGCTCTCCCTTAGACCACCACAACCAGCTCGGGAATTTTTTCGTTGA 471 0.5308 MEMERYTSQRWRPTDDQVKMMTNIYNHGVTHPSRAQVVEIASRLRTFADASEYNVHCWFNNHGNRIRRWQAEMDPTGTLFSQLPLYMYVTQFFLEEYGWVIMRAPRLLDLFPIPIIIDDDRDERQIPLPMPLAFRTRAPSTELSLRPPQPAREFFR 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01160 156 Gene3D - 8 73 - -
Vian11g01160 156 CDD homeodomain 10 70 IPR001356 GO:0003677
Vian11g01160 156 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
Vian11g01160 156 SUPERFAMILY Homeodomain-like 9 71 IPR009057 -
Vian11g01160 156 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian11g01160 156 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 68 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01160 Vian-Chr11 18857164 18857706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01160 7 72 Wox Gene Family AT5G59340 39.394 5.94e-12 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian11g01160 Homeodomain 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01160 - K05732 vum:124821070 253.447