Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01157 ATGGCTTTGAGGGTTATAGCAGTTTCGGCGGTTTCTACATTTCTAAGCTTTGTGGGTCTTCAGTTCTGCACAGACTTGTCTTTGGATAAACTTAGATCAGATGGACTAATAGGCTGGAATTTAATTCACTTGGACGATGCCAGCCAAGACATTGAGTTGCCCTCGGGTTTGTACACCACCATAGGGCTACTGCTGAATTGCATGATCAATTTATTTGTCCTTCTTAATCTTTGTATCAAGGCTGTGTTTTTCTCAGAGTTATATGCTTCTGAAACTCGTAAACTGATTGAGCGTCTAGTTAATTATGTCATTTACAAGGGAACATTTCTACCACTGATTGTGCCACCAACAATTTACCAAGCAGGTCTTTGGTCAACTTGGTTGACTGTGCTTTGCTCACTGAAGATGTTTCAAGCTTTAGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCATCTGCTACACCCTGGACGTATCTTCGTGTATATTCGGCATTATTATTTGTTTTCATGGCTGATGTTCTCTGGATAAGGCTTTGTCTGACAATATATAGAACACATGGGTCCTCTATGTATCTGCTATTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCTATTTTGGTACATGGCTTTCAGTTGCTTGACATATGGCTGCATCATTCAGCTTGCAATAGGGATTTCCGATCACCTAAACTGCTTGACACATTAACTGCAGGTTCATTGTTGGAATGGAAGGGAATTCTTATTCGTAACTTGGGGTTTTTCCTAGACATGGCTACATTTTTCATGGCACTTGGCCATTACTTGTATATATGGAGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTACTTAGTGCAATAGTTAATCGCATAAAAGGCTTTATCAAACTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACAGAGGAGCTAAGAGCGTATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTCCATCTTGCATGTTTAAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACTTGTCGAAAGCCACTTTTTGAGGGAGTGCCTGAAAATGAAGCAAGCTCTGACACAGGGACTATGTCTAGTGATGAACAGCTTGCACGCCAAATTAGTGCTGGATTAGACCGGCCAAACAATGCTAGACATGCCATGCCTACCGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGTGTTACTTGGAGGGGTGCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGAGCCGGTCCGTCTACTGCTATGAGAACAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATTCTTCTTGGAACCTTTGGCCCATTAATCCCTCTCAGGCTTCTGCGAGTGCTTCAACCATTCCTCCCCCTAATGGAAGATCATTAGGACGAACTGGTAGTTTACATTTAAGGACTGCTTCACAGCCTCCAAATGATAATGTGGCTAATATGCTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACATGATATTCCAGGACTTGCAAAGAACAAATTCTGTTATGGTTACTGTGAATAATCTTCTTCAAATGTGA 1758 0.4226 MALRVIAVSAVSTFLSFVGLQFCTDLSLDKLRSDGLIGWNLIHLDDASQDIELPSGLYTTIGLLLNCMINLFVLLNLCIKAVFFSELYASETRKLIERLVNYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMADVLWIRLCLTIYRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACNRDFRSPKLLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIVNRIKGFIKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFEGVPENEASSDTGTMSSDEQLARQISAGLDRPNNARHAMPTGLYPNQTLNTPEGVTWRGAGLDSGWLHSWPNQGVDGAGPSTAMRTVGLGRVQMMMRHLASVGETYAQTAFEDSSWNLWPINPSQASASASTIPPPNGRSLGRTGSLHLRTASQPPNDNVANMLAMAETVREVLPHIPDDMIFQDLQRTNSVMVTVNNLLQM 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01157 585 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 4 585 - -
Vian11g01157 585 Pfam CUE domain 548 585 IPR003892 GO:0043130
Vian11g01157 585 CDD RING-H2_AMFR 335 382 - -
Vian11g01157 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 385 IPR013083 -
Vian11g01157 585 ProSiteProfiles CUE domain profile. 545 585 IPR003892 GO:0043130
Vian11g01157 585 CDD CUE_RIN3_plant 546 583 IPR035667 -
Vian11g01157 585 ProSiteProfiles Zinc finger RING-type profile. 337 379 IPR001841 -
Vian11g01157 585 SMART ring_2 337 378 IPR001841 -
Vian11g01157 585 FunFam E3 ubiquitin protein ligase RIN2 310 389 - -
Vian11g01157 585 Gene3D - 544 584 - -
Vian11g01157 585 Pfam Ring finger domain 335 379 IPR001841 -
Vian11g01157 585 SUPERFAMILY RING/U-box 324 385 - -
Vian11g01157 585 MobiDBLite consensus disorder prediction 510 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01157 Vian-Chr11 18718134 18725741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01157 57 420 C3H Transcription Factor Family AT3G16090 27.411 4.64e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01157 K10636 - gmx:100820578 1087.02