Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01147 ATGTTCAAATCCTACGGGAAAGTTGATGAGCATGAGCAAATGGTGTTGGAAGCAAGGAAGAAAACCAGAAAGAGAATCACAATCATAGGATTGTCCTCGATTGTTTTAGCAGCCGTTGTTTTTGCTGCTGTGTTTGGCATTCGTGGCACCAACTCTTCAGAAGGTGCCAATGATGCTCACACTGTGACAGATTCAGTGAAGGCTGTTTGTGATGTGACATTGTACAAGGATTCGTGCTACAGCAGCCTTGGTTCTGCTGTGAACTCAAACCAGGTTCAGCCTCAGGAGTTGTTCCTGCTGTCAAAGAAGGTTGCCTTATCTGAAGTGTCCAAAGCTGTTGAATATTTCAGTGATCATGATCATGGAGCTTTCAAAGGGGTGGTTGTGAAGAACAGCAGGACCAAGGAGGCTATGAAAAATTGCAGGGAGCTTTTGGGTCTTGCGGTTGATCATCTGAATAGCTCTTTGACATCAGGGGAAAACTTTTCGCTTAAAGTTTTTGAGGATCTTCAAACATGGTTAAGTGCTGCAGGTACATATCTGCATACTTGTATCGAAGGCTTTGAAGATGAAAAAGAAGCAATTAAGACAAGTGTAGTAAGCTATCTTAAAAATTCTACACAGTTTACCAGTAACAGTCTTGCCATCGTTACCTGGATCAACAAGGCTACAACCAAACTGAACCTTAGGCGCTTACTGAGTTTACCTCATCACAATGAAGCACCAGCATGGCTTCCTTCAAAAGATAGGAGACTCCTTCTGACAGAGGATTTGAGGAAGAAAGCTGACATTGTTGTGGCCAAAGATGGCAGTGGGAAATATAAGAAAATTTCTGATGCACTTAAACATGTTCCTGATAAGAGCAACAAGAGGACTGTAATCTATGTGAAAAAAGGGATTTACTATGAAAATGTGAGGGTTGAGAAGACCAAATGGAATGTGATGATGATTGGTGATGGAATGACTTCTAGTATTGTATCTGCCAACCTTAATTTTGTGGATGGCACACCAACTTTTTCAACAGCAACATTTGGTAAGTGA 1041 0.415 MFKSYGKVDEHEQMVLEARKKTRKRITIIGLSSIVLAAVVFAAVFGIRGTNSSEGANDAHTVTDSVKAVCDVTLYKDSCYSSLGSAVNSNQVQPQELFLLSKKVALSEVSKAVEYFSDHDHGAFKGVVVKNSRTKEAMKNCRELLGLAVDHLNSSLTSGENFSLKVFEDLQTWLSAAGTYLHTCIEGFEDEKEAIKTSVVSYLKNSTQFTSNSLAIVTWINKATTKLNLRRLLSLPHHNEAPAWLPSKDRRLLLTEDLRKKADIVVAKDGSGKYKKISDALKHVPDKSNKRTVIYVKKGIYYENVRVEKTKWNVMMIGDGMTSSIVSANLNFVDGTPTFSTATFGK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01147 346 CDD PMEI-like_3 68 222 - -
Vian11g01147 346 SMART PMEI_2 61 216 IPR006501 GO:0004857
Vian11g01147 346 NCBIfam pectinesterase inhibitor domain 39 220 IPR006501 GO:0004857
Vian11g01147 346 PANTHER PECTINESTERASE 34 345 - -
Vian11g01147 346 SUPERFAMILY Pectin lyase-like 261 344 IPR011050 -
Vian11g01147 346 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 220 IPR035513 -
Vian11g01147 346 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 221 IPR035513 -
Vian11g01147 346 Pfam Pectinesterase 263 345 IPR000070 GO:0030599|GO:0042545
Vian11g01147 346 Gene3D - 258 345 IPR012334 -
Vian11g01147 346 Pfam Plant invertase/pectin methylesterase inhibitor 65 216 IPR006501 GO:0004857
Vian11g01147 346 FunFam Pectinesterase 62 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01147 Vian-Chr11 18517314 18518553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01147 4 344 Carbohydrate Esterase AT5G04960 51.724 2.03e-106 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01147 - - gmx:100811152 538.11