Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01133 ATGTCCAAAAACAAAGGGAAGAAGAAGAAAAAGAGCGAAAGCGACGAAGACGACGACGTTTTCTACTACCGCTATAGCAGCGTAAACCCTAACCCTACTCAACACAATCCCAATTCAAATCCAAATCCCAATTCAAATCCCAAAACCAATAACAAAGGATCCTCGTCGTTGGCACCGTCCAAATCAACGTTGTACGTTTCAAACCTCGATTACTCCCTAACCAATTCCGATCTCCACACGCTCTTCTCCAAATTTGGCCGAATCGCGCGCGTCACGGTCCTCAAGGACCGCCACACGCGCCTAAGCCGCGGCGTCGCATTCATCCAGTTCGTTTCCCCCGACGACGCGCGCAACGCCGCCACGCAGACGCACCGGATGGTCCTCAAAGATCGCACCCTCACCGCCTCTATCGCCGCCGACAACGGCCGCGCGCCCGAGTTCATCCGGAAGCGCGTCTACCGCGACACTGCCCGCTGCTTCGAGTGCGGCGCCGACGGGCACCTCTCCTACGATTGCCCGCGGAATCATTTAGGCCCCCGCCAGCGCCCCGAGCCCAAACGCCCCCGTCGTGTGCCCCACCACCGCGATGATGACAACAACGACGGCGGGGAGGATTCTGACGGTGGCGGAGCCGGTGCCCGGTTCGAAGATGATAATTGGGCGTCCGTGGTGGATGACGGCGCCGATGAGAGGCTATTGACGGGAAAGCGTGACGACGATGCTGTGGCTGCGAAGAGTAAGAAGAAGAAGAAAGCCGGGTACTTCAGTGATGAGAATTATTGA 783 0.5747 MSKNKGKKKKKSESDEDDDVFYYRYSSVNPNPTQHNPNSNPNPNSNPKTNNKGSSSLAPSKSTLYVSNLDYSLTNSDLHTLFSKFGRIARVTVLKDRHTRLSRGVAFIQFVSPDDARNAATQTHRMVLKDRTLTASIAADNGRAPEFIRKRVYRDTARCFECGADGHLSYDCPRNHLGPRQRPEPKRPRRVPHHRDDDNNDGGEDSDGGGAGARFEDDNWASVVDDGADERLLTGKRDDDAVAAKSKKKKKAGYFSDENY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01133 260 Gene3D - 1 146 IPR012677 -
Vian11g01133 260 SUPERFAMILY Retrovirus zinc finger-like domains 142 175 IPR036875 GO:0003676|GO:0008270
Vian11g01133 260 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Vian11g01133 260 MobiDBLite consensus disorder prediction 1 59 - -
Vian11g01133 260 MobiDBLite consensus disorder prediction 171 260 - -
Vian11g01133 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Vian11g01133 260 SUPERFAMILY RNA-binding domain, RBD 35 145 IPR035979 GO:0003676
Vian11g01133 260 ProSiteProfiles Zinc finger CCHC-type profile. 158 174 IPR001878 GO:0003676|GO:0008270
Vian11g01133 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Vian11g01133 260 Gene3D - 149 192 - -
Vian11g01133 260 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 259 IPR044598 GO:0000398|GO:0005689
Vian11g01133 260 MobiDBLite consensus disorder prediction 177 201 - -
Vian11g01133 260 MobiDBLite consensus disorder prediction 26 59 - -
Vian11g01133 260 SMART rrm1_1 63 136 IPR000504 GO:0003723
Vian11g01133 260 MobiDBLite consensus disorder prediction 8 22 - -
Vian11g01133 260 MobiDBLite consensus disorder prediction 219 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01133 Vian-Chr11 18271947 18272864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01133 62 151 Eukaryotic Initiation Factors Gene Family AT3G16380 31.111 4.59e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01133 K13154 - gmx:100814914 292.737