Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01130 ATGGGTCAAATGACACATGAGATTGATGACACTGTGCATGGTAAGAATCAGACTGGGTCACGGTTGAATGACGGTGGTATTGGAGGAGGTGTTGTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATACGCATGGAGAGGGGAATTGGAATGCTGTTCAGAAGTATTCAGGACTTTCTCGGTGTGGAAAAAGTTGCAGATTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAAGGCGCATTTACTGCAGAAGAGGAGCAGATGATCGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGGATGAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCGGAAGTAGTACTGCAAGCATTTCAAGATAATAAGCATGACCAAGGTACTGCTGAAATCAGCGATGGAGATGGAGGCCACCAGGATTTCATGGAGAAAAACAATTACGAGATACATGATGCAATATATGACAGTCTGAAGGAAAATCAGGGAATCTTACCTTTTGTGCCTCAGCTTCCTGATATTTCTGCTAATAGCATTCTGCCAAATGTTCTTGGTTCTCCTCCATACTGTAATTTCCTGCCATCGACATTACCTAACCATGATCATCTTCAAGAGTCATCCGTGTCTTTTATTGGTTCCAATGAATTGAACAGTAATGGGTTTTATCCATTTGACCACTTTAAGGATAATACTTCTGATAAGATTGCAGAATCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCATATGGCTCAATCTGTTACAGCCATTCAATATCGAATGACAATTACTCTACTTCTAAGCTAGCTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGGTAGCTGGGGTACCTCTCCCCCGCCTCCATTGAATGATTCTACTGATGTTTTCATCCATTCTCCTCAACCACCTTATGCACTAGACTCAGGTTCTTCTTCATCACTCACTCGTTGCTTCCTTAATGAATTTCTTTATCAGCAGGCGAAGACTCTTGGTTATTCAAATAATAATTGGCCTGAGAGTTCAAATTCATCCATTGCAACTCCCGTTGATGGAGCTGAGAGTTCAGCTTTGAATATGTACGAGACAGAGTGGGAGGATTATGCTGACCCTGTATCTTCCTTTGGTGCAACTTCAATCCTGAATGAGCATCCTGTTGTTGGCACCAACGGAAAGCCATGGGATGGGTGGGAACCTTTTCAGACCTTTAGTGGCAACAATGTGAAATTGCAGTCAGTTGAGGTTTCGGCCCCTATGAGTGAAAATCAATCCATGTCCATGTCTCTGTTGAATCTCACTTGGCCAGATGTCTTGCTGGCCTCAGATTGGCACGAGCTGTATTCTGAGCACAACAACATGAACCAAGCTGACATGATTGATGCTAGTGATAATTTCACGAGACAGTAA 1539 0.4379 MGQMTHEIDDTVHGKNQTGSRLNDGGIGGGVVLKKGPWTAAEDVILVDYVNTHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQMIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVVLQAFQDNKHDQGTAEISDGDGGHQDFMEKNNYEIHDAIYDSLKENQGILPFVPQLPDISANSILPNVLGSPPYCNFLPSTLPNHDHLQESSVSFIGSNELNSNGFYPFDHFKDNTSDKIAESFGLHSPLDHGASSYGSICYSHSISNDNYSTSKLASEAVKSELPSLQYPETEFGSWGTSPPPPLNDSTDVFIHSPQPPYALDSGSSSSLTRCFLNEFLYQQAKTLGYSNNNWPESSNSSIATPVDGAESSALNMYETEWEDYADPVSSFGATSILNEHPVVGTNGKPWDGWEPFQTFSGNNVKLQSVEVSAPMSENQSMSMSLLNLTWPDVLLASDWHELYSEHNNMNQADMIDASDNFTRQ 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01130 512 SMART sant 87 135 IPR001005 -
Vian11g01130 512 SMART sant 34 84 IPR001005 -
Vian11g01130 512 FunFam MYB-related transcription factor 34 87 - -
Vian11g01130 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Vian11g01130 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Vian11g01130 512 FunFam Transcription factor GAMYB 90 136 - -
Vian11g01130 512 Gene3D - 90 136 - -
Vian11g01130 512 ProSiteProfiles Myb-like domain profile. 33 82 IPR001005 -
Vian11g01130 512 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Vian11g01130 512 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Vian11g01130 512 MobiDBLite consensus disorder prediction 1 26 - -
Vian11g01130 512 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Vian11g01130 512 Gene3D - 34 87 - -
Vian11g01130 512 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Vian11g01130 512 CDD SANT 37 82 IPR001005 -
Vian11g01130 512 CDD SANT 90 131 IPR001005 -
Vian11g01130 512 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01130 Vian-Chr11 18237399 18240479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01130 30 487 MYB Transcription Factor Family AT5G06100 41.064 7.17e-102 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian11g01130 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01130 K09422 - gmx:100805804 821.231