LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian11g01117	ATGTCCGAGGGTATGACCGTGTCTGACCCAACAGCCCCTATCGGACCTTCCGTCGTGTCCGACGCCATCATCCATCACACCCCTTCTTCGTCTCATTCATACGATGTATTTGTGAGCTTCCGTGGTGAAGACACGCGCAACAACTTCACTAGTTTTCTCTTTGGAGATCTCCATCGAGCAGGCATTGTTGCCTTCAGAGATGACGAATGTATCAAAAAAGGTGATTTCATAGCACCCGAGCTTCTACAAGCCATTCAGGGCTCTCGACTTTTCGTTGTTGTCTTATCAAAGAACTATGCTTCCTCCACTTGGTGCTTACGTGAACTCGTAGAGATATTTAATTGCTGTGAAACTTCACCAAGACCTGTTATACCTATATTTTATGATGTTGAGCCTACGACGGTGCGCAACCAGAAAGGATGTTATGAGAAAGCATTTGCAGAACACGAAAACAGATTCAGAGAAGACAAGGTAAAGATGGAGGAAGTTCAAAGATGGAAAGAAGCTCTCAGAAAACTGGCCAATATCTCTGGTTCGGATATCGGAAATAAGCCACAAAATGAACAGATTGAAAAAATTGTTCAAGAGATAATAAATAATTTGAGACCAAAATTTTTAAATCTTCCAAGGGATCAACTAGTTGGGATAGAGGATCGAGTTCAAGACTTAGGAAATATTTTGCGTTTCGACCTCAATGATGTTCGAGTTGTCGGAATAAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCGGGCTTTATACGAAAGAATTTGTCATCAATATAAATATCGTTGTTTTATTGACGATGTAAGCAAAATATTTCTAGATTCTCGTTCGATGGGCTTACAAAAGCAATTAATTTCTCAGACTCTAAATGAGAAAAGTGTAAAGATTTGCAATGTTACTGAGGGAACATGTTTGGTGCAGTCCAAACTGAACAATGCTAAGGCACTCATAGTTTTTGACAACGTTGATCAAGTTCAACAACTGAGGATATTTAGCGGAAATAGAGACAATTTGTTGCGAGAATGCTTAGGTGGAGGGAGCAGAATCATCATAGTTTCTAGGGATGAACAAATATTGAAGATACACGGAGTGGATGATATTTATCAAGTTGGACCGTTGGAACGGAATGATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGTTAATTACATTTTGAGCGATTATGAAAAGTTGGCAGATAAGATACTATCACATGTTGAAGGCCATCCCTTGGCAATTGAAACAATTGGATCATCTTTGTTTGGCCGAAGTTTGTCACAATGGAAAAGTGTATTGGAAGGGCTGAAAGAAAATAAAAGTAAAAATATTATGGATATTTTGCGCATAAGTTATATTCAACTGGAAGAAAAATACAAACAAACTTTTTTAGATATTGCTTGCTTCTTCAATTCTTATGATGAAGAATGTGTGAAGGAAATTCTAAATTTCCGTGGATTTCATCCTGAAGATAGCATACAAGTTCTCATTGATAAATCACTCATTACCAGAGATTTCTATGATGGGATGACAATAAAAATGCATAGCTTGCTAGTGGATTTGGGCAGGTGTATTGTTCGGGAAGTATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACACGCAAAGATCTCCATGATGCTATGTCAGAGAACGAGGCAACTCGAAACCTTGAGGCAATAGTTCTTGAAGATGACCAGGAGAGGGATGATGTTGAAATCCCAGATGAAACAATCAAGGCGGATGGTTTATCAAAAATTAAACACCTGAAATTGCTTTCTGTTCGGTACGTGAACTTTTCGGGAAGTCTCAGTCATCTTTCGAATGAGCTAGGATATCTTGTTTGGTACGAATATCCGTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTAAGTCTGAATGGGAGAAGTATTCAACGACTGTGGGAAGGCACAAAGCCGTTACCCAATTTGAAGCGTTTGGATCTCGCTTTTTGCGAAAGTTTAGTTGAGATGCCAGATGTAGCAGAGGCCCTAAATCTTGAATGGATAAATCTTGAAGGATGCGTAAAGCTCCAAAAACTCAATCCATCGATTGGGAGTCTGAGAAAGCTTGTTCTTTTGAATTTGAGACACTGCAAAAAACTAGTAATCTTATCCAATACTATATTGGGCCTGAGTTCTATTAAATATCTGGATGTCTGTGGTTGTTCAATAATAGATAGTATTTGTTTACTAGATGAAACAAGGAACACAGAGCCCTCCTCTCCTCTCTCTTATTTGTGTGAACTCGATCTAAGCTTCTGTAACTTAGTTGAAATTCCTGATTACATTGGAAAGTTACGTTGCTTAGAGAGCCTAAATTTAGAGGGAAACAATTTTGTTAAATTGCCTAACCTCAAGGACCTTTTGAGACTGTATTATTTAAACTTACAGGATTGCAAGCTATTGAAATACTTGCCTGATCTCCCTTCACGAACTGTCTTGCCCTTAGAACCTTCCACGCTGTCGAGATTCTCATCTTCAATACTTGGTTGGCCTGATTTATTATTCAGTTCGAATAGAACAGGATTAATCATTATCGGCTGCCCAGAATTAGTTGAGATTGAACAGTGCACTACAAAGAGTTTTTCATGGGCAATTCAAATTCTTGAGGCGACCTACCACCACGGGACCGACAAATGTCTATTCCCAGAAAGTATCATACCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGTGGACATAGAATACCTGGACAAAGAAAACGTAACCGTTGATCCACCTCCCGTTCCGCATGACAATAATTTTATTGGTGTTTTGTGTTGCGTAATATTTCGTCTAGACCATAAACAAAATCCAATGAATTTTAGAAGAGATCACATGTGGTTACATTATGAAAACGTTTCTATTCATATTCATCCTTATCCTCCTTTCCTTTTGAGGTCGATTATCTCATTGTTGGGTTACAAGGGTTTTGTTACGGTGGATGTGAAGAAAGTTCAGTATCGCTGGGTAAATGAACAAGACCTAATTAACCTCAAAATGACGCATTGTGCAAATTTGACAGCTCGGAAGCGCAAGATTTCCGTAATTGAGGAAAACGGTTAG	3129	0.3896	MSEGMTVSDPTAPIGPSVVSDAIIHHTPSSSHSYDVFVSFRGEDTRNNFTSFLFGDLHRAGIVAFRDDECIKKGDFIAPELLQAIQGSRLFVVVLSKNYASSTWCLRELVEIFNCCETSPRPVIPIFYDVEPTTVRNQKGCYEKAFAEHENRFREDKVKMEEVQRWKEALRKLANISGSDIGNKPQNEQIEKIVQEIINNLRPKFLNLPRDQLVGIEDRVQDLGNILRFDLNDVRVVGISGMGGIGKTTLARALYERICHQYKYRCFIDDVSKIFLDSRSMGLQKQLISQTLNEKSVKICNVTEGTCLVQSKLNNAKALIVFDNVDQVQQLRIFSGNRDNLLRECLGGGSRIIIVSRDEQILKIHGVDDIYQVGPLERNDAIQLFCRNAFKVNYILSDYEKLADKILSHVEGHPLAIETIGSSLFGRSLSQWKSVLEGLKENKSKNIMDILRISYIQLEEKYKQTFLDIACFFNSYDEECVKEILNFRGFHPEDSIQVLIDKSLITRDFYDGMTIKMHSLLVDLGRCIVREVSPKEPIKWSRLWTRKDLHDAMSENEATRNLEAIVLEDDQERDDVEIPDETIKADGLSKIKHLKLLSVRYVNFSGSLSHLSNELGYLVWYEYPFECLPQSFQPHKLVELSLNGRSIQRLWEGTKPLPNLKRLDLAFCESLVEMPDVAEALNLEWINLEGCVKLQKLNPSIGSLRKLVLLNLRHCKKLVILSNTILGLSSIKYLDVCGCSIIDSICLLDETRNTEPSSPLSYLCELDLSFCNLVEIPDYIGKLRCLESLNLEGNNFVKLPNLKDLLRLYYLNLQDCKLLKYLPDLPSRTVLPLEPSTLSRFSSSILGWPDLLFSSNRTGLIIIGCPELVEIEQCTTKSFSWAIQILEATYHHGTDKCLFPESIIPGSQIPSLFNNEFVNVDIEYLDKENVTVDPPPVPHDNNFIGVLCCVIFRLDHKQNPMNFRRDHMWLHYENVSIHIHPYPPFLLRSIISLLGYKGFVTVDVKKVQYRWVNEQDLINLKMTHCANLTARKRKISVIEENG	1042

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian11g01117	1042	Gene3D	-	206	369	IPR027417	-
	Vian11g01117	1042	SUPERFAMILY	L domain-like	581	895	-	-
	Vian11g01117	1042	FunFam	Disease resistance protein (TIR-NBS-LRR class)	30	203	-	-
	Vian11g01117	1042	ProSiteProfiles	Leucine-rich repeat profile.	785	806	IPR001611	GO:0005515
	Vian11g01117	1042	Gene3D	Ribonuclease Inhibitor	541	857	IPR032675	-
	Vian11g01117	1042	Gene3D	-	376	459	IPR042197	-
	Vian11g01117	1042	ProSiteProfiles	TIR domain profile.	32	201	IPR000157	GO:0007165
	Vian11g01117	1042	SMART	till_3	33	176	IPR000157	GO:0007165
	Vian11g01117	1042	Pfam	TIR domain	34	207	IPR000157	GO:0007165
	Vian11g01117	1042	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	195	469	IPR027417	-
	Vian11g01117	1042	Pfam	NB-ARC domain	232	447	IPR002182	GO:0043531
	Vian11g01117	1042	PRINTS	Disease resistance protein signature	236	251	-	-
	Vian11g01117	1042	PRINTS	Disease resistance protein signature	312	326	-	-
	Vian11g01117	1042	PRINTS	Disease resistance protein signature	410	424	-	-
	Vian11g01117	1042	PRINTS	Disease resistance protein signature	655	671	-	-
	Vian11g01117	1042	SUPERFAMILY	Toll/Interleukin receptor TIR domain	26	178	IPR035897	-
	Vian11g01117	1042	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	34	743	IPR044974	GO:0006952
	Vian11g01117	1042	Gene3D	-	30	205	IPR035897	-
	Vian11g01117	1042	SUPERFAMILY	"Winged helix" DNA-binding domain	446	551	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian11g01117	Vian-Chr11	17890006	17893992	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian11g01117	29	872	WRKY Transcription Factor Family	AT4G12020	27.752	7.25e-73	263

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian11g01117	-		-	vra:106760531	1576.61