Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01111 ATGTCCGAGGGTATGACCGTGTCTGACCCAACAGCCCCTATCGGACCTTCCGTCGTGTCCGACGCCATCATCCATCACACCCCTTCTTCGTCTCATTCATACGATGTATTTGTGAGCTTCCGTGGTGAAGACACGCGCAACAACTTCACTAGTTTTCTCTTTGGAGATCTCCATCGAGCAGGCATTGTTGCCTTCAGAGATGACGAATGTATCAAAAAAGGTGATTTCATAGCACCCGAGCTTCTACAAGCCATTCAGGGCTCTCGACTTTTCGTTGTTGTCTTATCAAAGAACTATGCTTCCTCCACTTGGTGCTTACGTGAACTCGTAGAGATATTTAATTGCTGTGAAACTTCACCAAGACCTGTTATACCTATATTTTATGATGTTGAGCCTACGACGGTGCGCAACCAGAAAGGATGTTATGAGAAAGCATTTGCAGAACACGAAAACAGATTCAGAGAAGACAAGGTAAAGATGGAGGAAGTTCAAAGATGGAAAGAAGCTCTCAGAAAACTGGCCAATATCTCTGGTTCGGATATCGGAAATAAGCCACAAAATGAACAGATTGAAAAAATTGTTCAAGAGATAATAAATAATTTGAGACCAAAATTTTTAAATCTTCCAAGGGATCAACTAGTTGGGATAGAGGATCGAGTTCAAGACTTAGGAAATATTTTGCGTTTCGACCTCAATGATGTTCGAGTTGTCGGAATAAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCGGGCTTTATACGAAAGAATTTGTCATCAATATAAATATCGTTGTTTTATTGACGATGTAAGCAAAATATTTCTAGATTCTCGTTCGATGGGCTTACAAAAGCAATTAATTTCTCAGACTCTAAATGAGAAAAGTGTAAAGATTTGCAATGTTACTGAGGGAACATGTTTGGTGCAGTCCAAACTGAACAATGCTAAGGCACTCATAGTTTTTGACAACGTTGATCAAGTTCAACAACTGAGGATATTTAGCGGAAATAGAGACAATTTGTTGCGAGAATGCTTAGGTGGAGGGAGCAGAATCATCATAGTTTCTAGGGATGAACAAATATTGAAGATACACGGAGTGGATGATATTTATCAAGTTGGACCGTTGGAACGGAATGATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGTTAATTACATTTTGAGCGATTATGAAAAGTTGGCAGATAAGATACTATCACATGTTGAAGGCCATCCCTTGGCAATTGAAACAATTGGATCATCTTTGTTTGGCCGAAGTTTGTCACAATGGAAAAGTGTATTGGAAGGGCTGAAAGAAAATAAAAGTAAAAATATTATGGATATTTTGCGCATAAGTTATATTCAACTGGAAGAAAAATACAAACAAACTTTTTTAGATATTGCTTGCTTCTTCAATTCTTATGATGAAGAATGTGTGAAGGAAATTCTAAATTTCCGTGGATTTCATCCTGAAGATAGCATACAAGTTCTCATTGATAAATCACTCATTACCAGAGATTTCTATGATGGGATGACAATAAAAATGCATAGCTTGCTAGTGGATTTGGGCAGGTGTATTGTTCGGGAAGTATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACACGCAAAGATCTCCATGATGCTATGTCAGAGAACGAGGCAACTCGAAACCTTGAGGCAATAGTTCTTAGATGGGTATATAAGAGGGATGCAGATGAAACAATCAAGGCGGATGGTCTATCAAAAATTAAACACCTGAAATTGCTTTATGTTGCGAACGTGAACTTTTCGGGAAGTCTGAGTCATCTTTCGAATGAACTAGGATATCTTGTTTGGTTTGGATATCCGTATGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTAATCATAAGTAAGAGCAGTATTAAACGACTGTGGGAAGGCACAAAGTCGTTACCCAATTTGAAGCATTTGGGTCTCTCTTTTTGCAAAAGTTTAGTTGAGATGCCAGATGTAGGAGAGGCCCTAAATCTTGAATGGATAAATCTTGAAGGATGCGTGCAACTCCAAAAACTCAATCCATCGATTGGGAGTCTGAGAAAGCTTGTTCGTTTGAATTTGAAAGACTGCAAAAAACTAGTAATCTTATCCAATAATATATTAGGCCTGAATTCTCTTAAATATTTGGTTGTCAGTGGTTGTTCAATAATAGATAGTAAATGCTTACAAGATGAAACAAGGAACACAGAGCAGTTGATCAGCTGTTTGTCGCCCTCCTCTCCTCTCTCTTGTTTGTGTGAGCTCGATCTAAGCTTCTGTAACTTAGTTGAAATTCCTGATTACATTGGAAAGTTAAGTTGCTTAGAGAGGCTAAATTTAGAGGGAAACAATTTTGTTAAATTGCCTAACCTCAAGGACCTTTGGAGACTGTCTTTTTTAAAGCTACAGGATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACGAACTGTCTTGCCCTCAGAACCTTTCATACCGAGATTCCCATCTTCAATACTTGATTCGCCTGATTTTTTGACTGAGGAAGAAATAGGTATTAGATTTGCAGGATTAATCATTTTCGGCTGCCCAGAATTAGTTGAGATTGAACAGTGCACTACAAAGAGTTTTTCATGGGCAATTCAAATTGTTGAGGCGACCTACCACCATGTGGCCTACCAATTGCCACAAAGTATTATACCTGGAAGTCAAATACCAAGCTTGTTCGACGATGAGTTTGAGAACGTCGACATAGGATACCCGGACGAAGAATGCCTGTACCTATTGGTTGATCCACCTCCCGTTCCGCATGACAATAATTTTATTGGTGTTTTGTGTTGCGTAATATTTCGTCTAGACCATGAAGAAATTCCAATGGATTCTAGAAGAGATCACATGTGGTTACATTATGAAGGGGTTTCTATGGACGAACGGGATATTCCTGCTTGTGGTTTCCCTTGTGACTGGATTGAGTCATTGTTGGGTTACAATAATATTGCTACGGCGTATGTGAAGAAATTTAAGTATCGCTGGGTAAATGAACAAGACCTAATTAACCTCAAAATGACGCATTTTTCAAATTTCACAGGTCGGAAGCGCAAGATTTCCGTAATTGAGGAAAACGGTTAG 3153 0.3907 MSEGMTVSDPTAPIGPSVVSDAIIHHTPSSSHSYDVFVSFRGEDTRNNFTSFLFGDLHRAGIVAFRDDECIKKGDFIAPELLQAIQGSRLFVVVLSKNYASSTWCLRELVEIFNCCETSPRPVIPIFYDVEPTTVRNQKGCYEKAFAEHENRFREDKVKMEEVQRWKEALRKLANISGSDIGNKPQNEQIEKIVQEIINNLRPKFLNLPRDQLVGIEDRVQDLGNILRFDLNDVRVVGISGMGGIGKTTLARALYERICHQYKYRCFIDDVSKIFLDSRSMGLQKQLISQTLNEKSVKICNVTEGTCLVQSKLNNAKALIVFDNVDQVQQLRIFSGNRDNLLRECLGGGSRIIIVSRDEQILKIHGVDDIYQVGPLERNDAIQLFCRNAFKVNYILSDYEKLADKILSHVEGHPLAIETIGSSLFGRSLSQWKSVLEGLKENKSKNIMDILRISYIQLEEKYKQTFLDIACFFNSYDEECVKEILNFRGFHPEDSIQVLIDKSLITRDFYDGMTIKMHSLLVDLGRCIVREVSPKEPIKWSRLWTRKDLHDAMSENEATRNLEAIVLRWVYKRDADETIKADGLSKIKHLKLLYVANVNFSGSLSHLSNELGYLVWFGYPYECLPQSFQPHKLVELIISKSSIKRLWEGTKSLPNLKHLGLSFCKSLVEMPDVGEALNLEWINLEGCVQLQKLNPSIGSLRKLVRLNLKDCKKLVILSNNILGLNSLKYLVVSGCSIIDSKCLQDETRNTEQLISCLSPSSPLSCLCELDLSFCNLVEIPDYIGKLSCLERLNLEGNNFVKLPNLKDLWRLSFLKLQDCKRLKYLPDLPSRTVLPSEPFIPRFPSSILDSPDFLTEEEIGIRFAGLIIFGCPELVEIEQCTTKSFSWAIQIVEATYHHVAYQLPQSIIPGSQIPSLFDDEFENVDIGYPDEECLYLLVDPPPVPHDNNFIGVLCCVIFRLDHEEIPMDSRRDHMWLHYEGVSMDERDIPACGFPCDWIESLLGYNNIATAYVKKFKYRWVNEQDLINLKMTHFSNFTGRKRKISVIEENG 1050
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01111 1050 SUPERFAMILY L domain-like 517 828 - -
Vian11g01111 1050 FunFam Disease resistance protein (TIR-NBS-LRR class) 30 203 - -
Vian11g01111 1050 Gene3D Ribonuclease Inhibitor 576 751 IPR032675 -
Vian11g01111 1050 Gene3D - 376 459 IPR042197 -
Vian11g01111 1050 Pfam TIR domain 34 207 IPR000157 GO:0007165
Vian11g01111 1050 Gene3D Ribonuclease Inhibitor 752 834 IPR032675 -
Vian11g01111 1050 Gene3D - 30 205 IPR035897 -
Vian11g01111 1050 ProSiteProfiles TIR domain profile. 32 201 IPR000157 GO:0007165
Vian11g01111 1050 SMART till_3 33 176 IPR000157 GO:0007165
Vian11g01111 1050 ProSiteProfiles Leucine-rich repeat profile. 788 809 IPR001611 GO:0005515
Vian11g01111 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 469 IPR027417 -
Vian11g01111 1050 Pfam NB-ARC domain 232 447 IPR002182 GO:0043531
Vian11g01111 1050 SUPERFAMILY Toll/Interleukin receptor TIR domain 26 178 IPR035897 -
Vian11g01111 1050 PRINTS Disease resistance protein signature 410 424 - -
Vian11g01111 1050 PRINTS Disease resistance protein signature 651 667 - -
Vian11g01111 1050 PRINTS Disease resistance protein signature 236 251 - -
Vian11g01111 1050 PRINTS Disease resistance protein signature 312 326 - -
Vian11g01111 1050 Gene3D - 206 369 IPR027417 -
Vian11g01111 1050 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 738 IPR044974 GO:0006952
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian11g01111 Vian-Chr11 17675623 17679633 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01111 29 831 WRKY Transcription Factor Family AT4G12020 28.970 9.23e-74 266
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01111 - - vra:106760531 1576.99