Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01094 ATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCAGAAACAGTTTTGTCCCATATACCGAAATCAGAGTTGCACATCAGTTCCACTTCTCAGACAAGATTTTTCGGGATGCTTTCTGAGGCGTATTTCTATTTTGTGAGAGCACAGATTGAGATGGCATTGGGAAGGTTCGAGAACGCCGTTACAGCTGCTGAGAAAGCCAGTCAGATTGATCCACGGAGTGTTGAAGTTGCTGTTTTGCTGAACAATGTGAGGATGGTGGCAAGGGCTCGAGTGCGTGGCAATGATCTCTTTAAATCTGAAAGGTACACCGAAGCTTGCTCGGCGTACGGAGAAGGTCTGAGACTGGACCCTTCCAATTCTGTGCTATATTGCAACAGAGCAGCTTGTTGGTTTAAGCTTGGCCAGTGGGAAAGATCAATTGAAGACTCCAACCAAGCTTTGCACATCCAACCAAATTACACCAAGGCCCTTCTTCGAAGGGCTGCATCAAACAACAAGCTAGAACGGTGGGAGGAAGCCGTCAAAGATTATGAGGTCTTGAGGAGAGAACTTCCAAACGATAACGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTGAAGAAATCACGTGGGGAAGAAGTATATAATCTAAAATTTGGTGGCGAAGTGGAAGAAGTATCAGGTCTGGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTATGTCTTGTCCATTTTGAAGTTGCATCTAACTCGCAATGCAAACAGATATCACCGTTTGTCGATACACTATGCGGTCGATATCCATCCATTAACTTCCTCAAGGTGGACATTGAAGAAAGCCGAGCAGTTGCAACTGCGGAGAACGTTAGAATTGTACCAACCTTCAAGATATACAAAAATGGGAGCCGAGTGAAGGAAATCGTTTGCCCAAGTCGTGAGATGTTGGAACACTCGGTGAGGCATTACAGCTTTTAG 978 0.4509 MCRAEAFLKLHQIDDAETVLSHIPKSELHISSTSQTRFFGMLSEAYFYFVRAQIEMALGRFENAVTAAEKASQIDPRSVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALHIQPNYTKALLRRAASNNKLERWEEAVKDYEVLRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVCLVHFEVASNSQCKQISPFVDTLCGRYPSINFLKVDIEESRAVATAENVRIVPTFKIYKNGSRVKEIVCPSREMLEHSVRHYSF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01094 325 CDD TRX_family 230 314 - -
Vian11g01094 325 ProSiteProfiles TPR repeat profile. 125 158 IPR019734 GO:0005515
Vian11g01094 325 Gene3D Tetratricopeptide repeat domain 1 211 IPR011990 GO:0005515
Vian11g01094 325 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 322 IPR044534 -
Vian11g01094 325 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Vian11g01094 325 Pfam Tetratricopeptide repeat 97 155 - -
Vian11g01094 325 SUPERFAMILY Thioredoxin-like 128 323 IPR036249 -
Vian11g01094 325 SMART tpr_5 159 192 IPR019734 GO:0005515
Vian11g01094 325 SMART tpr_5 125 158 IPR019734 GO:0005515
Vian11g01094 325 SMART tpr_5 45 78 IPR019734 GO:0005515
Vian11g01094 325 SMART tpr_5 91 124 IPR019734 GO:0005515
Vian11g01094 325 Pfam Tetratricopeptide repeat 47 76 IPR019734 GO:0005515
Vian11g01094 325 Pfam Thioredoxin 230 315 IPR013766 -
Vian11g01094 325 Gene3D Glutaredoxin 218 324 - -
Vian11g01094 325 FunFam TPR repeat-containing thioredoxin TTL4 217 324 - -
Vian11g01094 325 Coils Coil 165 185 - -
Vian11g01094 325 SUPERFAMILY TPR-like 3 85 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01094 Vian-Chr11 16417502 16418864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01094 90 231 U-box Gene Family AT3G07370 27.528 3.29e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01094 - - gmx:100804531 593.578