Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01092 ATGGAACCGAATGCGCTGCCTTCAATTTTGTCATCAACCACTGTTCATCGTCTTCTCCAGCTTAAAACACGCAGATCCCACTTCACGATCCCACTTCACACTTTCTTCTTCATGCCATCAACACCTTCTTCGTCCTCATCTACAAGCCTGAAACTCAAAAACAACAAGAAAATTGAACAAACAACATACTGCAATACTAACCTCACCTTAGACGTTGCTCGTCGTCGTCAATGGAAGAAATCGCCGTTGCTCTTCGTTTCACAATCCTCCCAAATCTCTTCAAAGCCAAGAATGATGAAAAACCGCGATATCCCACAAATCCGTCTTCACCTTTCCTCATGTTTTCTCTCATCCAAACACGACTGCATTTTACAATCATCGCTCGCATTCGCGCTTAAACAGCCCTCTCTAGCCGAACTGGTGAGAATGCTCCTAGAGAGAGAAACAGGAGCTCTTTTTATTTCTGGTGGGGTTGAAGAGTCTGCGATGGGTAGGGAAGACATGAGTCTCCCTCTGTCGAAAATCGTTGTTGCTTTACCCACACCTTCCTTTAGCAGGAGACCTTTTTCTATTAATTGGTGTCAATATAACGAAAACTCAGTTGCATTGCATCCCTCGTCTTCTAGACTTACACACCCTGAAGAGGGGAACTTTATGGAGAGCTTTGCGAGCAGGCTTGTAGTTACTATTGCTTACTATGGCAGGATGCAGTCAGAAGACCCTGCTGCAATGTTGGCTTATCGATGGTGGCTTTTGGATCCTTTTGTAGTGGTTATATTTGTTGATAGAAAGATTGGTGCCCTGAAAAAGGGGGAGGTAGTGAAAGCAACTTGGAGTTTAGTTTCTAGTAAGTATAAGGTGTCATGTGCTCCCATTGATTCAAGCTCTGGAAATTTGAATCAGGTACCTGGAGGGTCTAATGTAAATTCTGTTCGTCAAGCCAAAATTAGAAATTCTAGAAGTCTTCATAAGCAGAGTTCAGAAAACTATCAGGAAACAGATAATATTATTGATGGACATGAGCCAATGGACATGTCAGAAGAAAATAACACATCCAGTGTGAGCTATGGCCTGGTTCATTCTCATGACTCAAGGGCTATACAACAGTCTGAATGTAGTGAGGAAGAGGGTGGGAAAATTTTAGTAGATCCTGCATCTGGGAAAGATAGCACATATTCTGTTTTTAATCTTACTTTGAGAAAGAAAATGAGAAGGAAGTGCAAAAGGGTATCTGAAATTAGAATGAGTATGTCCTACCATGGTGACATGCTGGGCTCAACTGTCACTAACCAGGTGCAGTCACTAGATGGTGAATCATGTGGTTTGGAAGAGGTCAAGAATTATCTAATTGACAATTCTGGAAGGAAAAGAAGCTGCAGAAAGTTATCATCTGCCAGTGCAATTCAGAGAAATATCAGGAAAACAAACTGCTCCGTAACTGGAACGGATAGGTCTAACAGATGCCAAATTAAAGATGATGATTTATTGGTGTCTGCAATATTCAGGAATAAGGACTTCGGGCCAAAGGCAATCCGGGGAAATTCTAGAGCTAAATCCTGCAAATCAAGGGGCCAGAGAAAACTTAAAAGCCAAAAGGGTCGTTGCAGGTTGCTGCCAAGGAACCCCTGTAATGGAGGGAAATACAATAAGGACTGTAATAGGTTTTATTTGGGTTCAAGGACAATATTGTCCTGGTTGATGGATAATGGGGTCATATCTTTAAATGATGTGATTCAATACCGAAATGCTAAGGATAATGTTGTCATTAAGGATGGTAGGATCACCAAAGATGGTATTATATGTATATGTTGTGGTAAGGTGCTTACATTATCTGAGTTCAAGTTGCATGCTGGGTTTACATTGAATCGCCCCTGCATGAATATTTTTATGGAGTCTGGCGAGCCCTTTACATTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCTGAATCAAGCTGTGCAGGCTGAAGATAATGACAAAAATGATGATTCATGCGGGTTATGTGGTGAAGGGGGTGAGCTGATATGTTGTGATAATTGTCCATCTACTTTCCACGCAGCTTGTTTGTCCACTCAGGAGATCCCAGATGGTGACTGGTATTGTGCAAACTGCACTTGTAGGATATGTGGAAATTTGGTTATTGATAAAGACACTTCAGATCTGCAGGATTTGTTACAATGTTCACAGTGTGAACATAAATATCACGAGACATGCCTGAAAGATAGAGAAACAAGAGAAGGAGCAGCCTCAGACATTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTGTACACTGGACTCCAATCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGACATCTCATGGACGCTTCTTAGATGCATTCATGATGACCAAAAAGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACGAAATTAGCAGTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCGATGCTTGATCCAAGAACAGGCATCCACATGATACCTCAAGTTTTATACAACTGGGGGTCTGAGTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCATGGTATTGGAAAAACAGGATGTGTTAGTATCTGTAGCATCTATCAGGGTGCATGGAACCACTGTAGCAGAGATGCCTCTAATTGCTACTTGCAGTCGGTTTCGTCGCCAGGGAATGTGCCGGCTCCTTGTGAGTGCTATCGAGGAGATGTTAACATCTTTCAAGGTGGAAAAGCTTGTGGTATCAGCCATTCCTGATTTGGTTGAGACATGGACTAAGGGCTTTGGATTCAAACCCGTTGATGATGTTGAAAGGAAAAGATTGAATAAGTTTAACATGATGATATTTCCCGGGACAGTGTTTCTTGAGAAACCGTTACACAGGAAGATGAAAACTGAAGGACTGTGTGATGAATCAACTCAAGCAACGGATGAATCCGTCAAGGTATGCATCAGTTCTGAAGGAATGACCATTACTGACTCATTTCTACCAGATGTTGCAAACATTACCACCAATCAAGTTGAAGCAAAGTCAGAACATGAACCTGTGGACGGTAAAAATCAGTCAGACTATGAAGCTGGCAGTGATACCCTCAGAAAAGACAATACACAACCTGTTGACACTGCATTGGAGGCCAAAGAATCAACAGAAATAAGTAGTAGCTGTTTTACGGAAGAGATCATCCACTTAACAGTGTCAGGTGGCTCAGAGAAATCTATGGAAGAGAACAATGTGAGCGAACTGAGAACATGCAATAAAGTGGAAATGGAAAGTGATTCAGTACAGCAATCTAGTGAGAATTTTTGTGCAATCCAAGATGGTGCTGAACCAAGTATAAGGATTGTGGAGGACACGAATATCAAAATAGGGGAGGGTCAGGAAAATGCTTTGCAGGGCCATTTTTCAAATCTATCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAGTATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACATTTGCAAAGTCTGCAAGCTGA 3543 0.4183 MEPNALPSILSSTTVHRLLQLKTRRSHFTIPLHTFFFMPSTPSSSSSTSLKLKNNKKIEQTTYCNTNLTLDVARRRQWKKSPLLFVSQSSQISSKPRMMKNRDIPQIRLHLSSCFLSSKHDCILQSSLAFALKQPSLAELVRMLLERETGALFISGGVEESAMGREDMSLPLSKIVVALPTPSFSRRPFSINWCQYNENSVALHPSSSRLTHPEEGNFMESFASRLVVTIAYYGRMQSEDPAAMLAYRWWLLDPFVVVIFVDRKIGALKKGEVVKATWSLVSSKYKVSCAPIDSSSGNLNQVPGGSNVNSVRQAKIRNSRSLHKQSSENYQETDNIIDGHEPMDMSEENNTSSVSYGLVHSHDSRAIQQSECSEEEGGKILVDPASGKDSTYSVFNLTLRKKMRRKCKRVSEIRMSMSYHGDMLGSTVTNQVQSLDGESCGLEEVKNYLIDNSGRKRSCRKLSSASAIQRNIRKTNCSVTGTDRSNRCQIKDDDLLVSAIFRNKDFGPKAIRGNSRAKSCKSRGQRKLKSQKGRCRLLPRNPCNGGKYNKDCNRFYLGSRTILSWLMDNGVISLNDVIQYRNAKDNVVIKDGRITKDGIICICCGKVLTLSEFKLHAGFTLNRPCMNIFMESGEPFTLCLLQAWSAEYKARKSLNQAVQAEDNDKNDDSCGLCGEGGELICCDNCPSTFHAACLSTQEIPDGDWYCANCTCRICGNLVIDKDTSDLQDLLQCSQCEHKYHETCLKDRETREGAASDIWFCGQSCQEVYTGLQSQVGLVNQVADDISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDPRTGIHMIPQVLYNWGSEFARLNFQGFYTMVLEKQDVLVSVASIRVHGTTVAEMPLIATCSRFRRQGMCRLLVSAIEEMLTSFKVEKLVVSAIPDLVETWTKGFGFKPVDDVERKRLNKFNMMIFPGTVFLEKPLHRKMKTEGLCDESTQATDESVKVCISSEGMTITDSFLPDVANITTNQVEAKSEHEPVDGKNQSDYEAGSDTLRKDNTQPVDTALEAKESTEISSSCFTEEIIHLTVSGGSEKSMEENNVSELRTCNKVEMESDSVQQSSENFCAIQDGAEPSIRIVEDTNIKIGEGQENALQGHFSNLSCKTFLGSNFDTDSSIECSVMYDETAFFGTFAKSAS 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01092 1180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 711 IPR013083 -
Vian11g01092 1180 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 819 943 IPR016181 -
Vian11g01092 1180 Gene3D - 815 954 - -
Vian11g01092 1180 CDD PHD_SF 710 760 - -
Vian11g01092 1180 SUPERFAMILY FYVE/PHD zinc finger 655 710 IPR011011 -
Vian11g01092 1180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 769 IPR013083 -
Vian11g01092 1180 ProSiteProfiles Zinc finger PHD-type profile. 667 712 IPR019787 -
Vian11g01092 1180 SMART PHD_3 669 710 IPR001965 -
Vian11g01092 1180 SMART PHD_3 711 765 IPR001965 -
Vian11g01092 1180 Pfam Tify domain binding domain 592 642 IPR032308 -
Vian11g01092 1180 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 820 967 IPR000182 GO:0016747
Vian11g01092 1180 MobiDBLite consensus disorder prediction 1017 1037 - -
Vian11g01092 1180 MobiDBLite consensus disorder prediction 1014 1042 - -
Vian11g01092 1180 CDD PHD2_CHD_II 669 709 - -
Vian11g01092 1180 Pfam PHD-finger 670 711 IPR019787 -
Vian11g01092 1180 PANTHER PHD FINGER FAMILY PROTEIN 184 1105 - -
Vian11g01092 1180 SUPERFAMILY FYVE/PHD zinc finger 710 762 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01092 Vian-Chr11 16091259 16109397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01092 236 1025 PHD Transcription Factor Family AT3G14980 43.484 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian11g01092 TDBD 8.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01092 - - gmx:100777440 1594.33