Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01088 ATGATTAAAAATGGAGTCTGCACTCTCCGCACCTGCTTCCGTTTTCCGGGGAGGTCGCTATTCCCACCATTGCAGCGCTCGTTCACTTTCCGGCGGCGGTTTCTGGTGACTGCATCCCAAAGGAAGAAGAAAGAGAAGGTTATTGTCATTTCTGGACCCACCGGTTCGGGCAAGAGCCGCCTCGCATTGGAACTCGCTAAGAGCCTCAACGGCGAAATCGTCAGTGCAGACTCTGTCCAGGTATATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAGATGAAAGAAAGGAGGTGCCACATCATCTGGTTGACATACTGCTCCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAATCTTCTTCAGTGATTACATCTGAAGTAAATCAAGAATTAGCTGAACTACAGAGGAATGAAGACTGGGATACAGCTGTACAGTTGGTGGTAAAAGCAGGAGACCCAAAGGCTCAATTTCTAGCAGTGAATGATTGGTATCGACTACGGCGTAGCCTAGAGATTACTAAGTCTAGTGGATCACCTCCTTCTGCATTTCGGGTACCATATGATTCTTTCAGGGAACAGGGTGAATGTAGTGTTGATGATTCTGAGTCATCTGATATGAACACCTACGGTGATGGAATGGAAGAAACCAGCTCATCAGAGTTAGACTATGAGTTTATGTGCTTTTTCCTTTCTAGTCATAGACTTGACCTCTATAGATCAATTGATTATCGGTGTGAAGATATGCTTTTAGGAAGGGATGGGATTTTGTCCGAGGCTCAGTGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGTCAGAGTTCTGCTGCAGAGTTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGCAATGAAAAGATATACCAGTGGCTTGATGGTTCTAAACCTCTGGAAACCATTCTCAGTTTCATTAATGACGCATACCATGACTGGAATGGAAGTCTTCCTGTGCCTGAACACTTAAAAATGTCGAGAGATATTTCTAATCGCCGAGAAGAAAAACATCTAAAGTCTTACCGCACCAGAAATAGGCATTTTGTGAAGGGGGAAGATTGTTCTCATATTCTTAATTGGATAAGCAAGACTCAAAGGTGA 1344 0.4375 MIKNGVCTLRTCFRFPGRSLFPPLQRSFTFRRRFLVTASQRKKKEKVIVISGPTGSGKSRLALELAKSLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILLPSEDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKSSSVITSEVNQELAELQRNEDWDTAVQLVVKAGDPKAQFLAVNDWYRLRRSLEITKSSGSPPSAFRVPYDSFREQGECSVDDSESSDMNTYGDGMEETSSSELDYEFMCFFLSSHRLDLYRSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSAAEFYKFLFEFQKASRNFAKRQLTWFRNEKIYQWLDGSKPLETILSFINDAYHDWNGSLPVPEHLKMSRDISNRREEKHLKSYRTRNRHFVKGEDCSHILNWISKTQR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01088 447 Pfam IPP transferase 80 368 - -
Vian11g01088 447 Gene3D - 44 436 IPR027417 -
Vian11g01088 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 352 IPR027417 -
Vian11g01088 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 176 IPR027417 -
Vian11g01088 447 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
Vian11g01088 447 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Vian11g01088 447 Gene3D - 156 226 - -
Vian11g01088 447 MobiDBLite consensus disorder prediction 235 254 - -
Vian11g01088 447 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 373 IPR039657 -
Vian11g01088 447 Hamap tRNA dimethylallyltransferase [miaA]. 47 385 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01088 Vian-Chr11 16017822 16023482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01088 50 224 C2H2 Transcription Factor Family AT2G27760 28.962 7.83e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01088 K00791 - gmx:100808814 790.801