Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01083 ATGGTGAGAGGAGGTGGAGGAGGAGGAGGAGGGGAGATAGTGGAAGTTGAAGGGGGACACATTGTGCGGTCCACGGGGCGGAAGGATCGCCACAGCAAAGTTTGCACTGCCAAAGGGCCGCGCGACCGGCGGGTGAGGCTATCGGCCCACACCGCAATTCAATTCTACGACGTGCAGGATCGGTTGGGCTACGACCGGCCCAGTAAGGCCGTGGACTGGCTCATCAACAAAGCCAAGGACGCCATCGACCAACTCGCGCATCTCCCTCCCTGGAAACCCACCCTTCCGACAGCAAACCACCTAAACGACGACGAATCAGACAAAACAAACCCTAATAACCCGAACTCAACTACAAACACTAGCACAAACCCTGATGCTGAAATTCTGAACCAGTTCAACGAGAACCTTGAGAACGATGATGGTGGAGGAGGAGGAGGAGGTTCGAGTTATCTTCCCTTGGATAACGACGCTATAAGATCGTTCTTTCCCACAACGACGTCGTCGTTGATTCAGTTCCAAAGCTACCCACCGGATTTGCTTTCGAGGACGAGCAGCCAGGATTTGCGTCTATCGCTTCAGTCCTTGCAGGACCCGATTATGCTCCACCATAACCAAAACGAGCACGTGCTTTTCGCTGGAGCCGGGTTTGATAATATGGGAGCGTGGAACAACAGTGGGAATGCTACTAATGATACTCATGGTGGTGGAGGTGGAGGAGGGTTCGTGGTTAACGCTCCCTCTCCTTTTCCGGGGCCGGCGACTGTTGCGCCGCCGGCGGTGGTTTTTGGCTATGGTAATGGGAATGGTCAAGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCGTCCGTTCGTGCGTGGATTGACGCGCCGTCGTTCGTGGCCGCCGCCGATCATTATCATCGGCATCACTACTTGTCACCGGCGGCTGCGGCGGCGTTGGTGTATCAGTCATCTCCTTCTTCGGCATTTGCGCCCGGGGGCTTCTCGGGATTCCGCGTGCCGGCACGAATTCAGGGTGAAGAGGAGCACGACGGCGTGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCGCTGA 1095 0.5626 MVRGGGGGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKDAIDQLAHLPPWKPTLPTANHLNDDESDKTNPNNPNSTTNTSTNPDAEILNQFNENLENDDGGGGGGGSSYLPLDNDAIRSFFPTTTSSLIQFQSYPPDLLSRTSSQDLRLSLQSLQDPIMLHHNQNEHVLFAGAGFDNMGAWNNSGNATNDTHGGGGGGGFVVNAPSPFPGPATVAPPAVVFGYGNGNGQGQYFSQRGPLQSSNTPSVRAWIDAPSFVAAADHYHRHHYLSPAAAAALVYQSSPSSAFAPGGFSGFRVPARIQGEEEHDGVSDKPSSASSDSRR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01083 364 MobiDBLite consensus disorder prediction 1 42 - -
Vian11g01083 364 MobiDBLite consensus disorder prediction 21 42 - -
Vian11g01083 364 MobiDBLite consensus disorder prediction 339 364 - -
Vian11g01083 364 MobiDBLite consensus disorder prediction 108 125 - -
Vian11g01083 364 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 281 IPR005333 GO:0003700
Vian11g01083 364 MobiDBLite consensus disorder prediction 88 125 - -
Vian11g01083 364 Pfam TCP family transcription factor 26 110 IPR017887 -
Vian11g01083 364 ProSiteProfiles TCP domain profile. 27 85 IPR017887 -
Vian11g01083 364 MobiDBLite consensus disorder prediction 341 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01083 Vian-Chr11 15640001 15641095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01083 7 363 TCP Transcription Factor Family AT1G53230 45.477 1.23e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian11g01083 TCP 4.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01083 - - vum:124829805 594.734