Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01078 ATGTCGAAAACGAAGTCAAGTAAAAAAGACTTGAACTCCTACACCATCAAAGGTACCAACAAGATCGTAAGAGTTGGGGACCATGTGACGATGCGCCCTCCTGATACGAACAAGGCACCATACGTGGCTCGTGTTGAGAAAATTGAACCTTGTCGTAAGAACGATGTGAAGGTGCATGTTAGGTGGTACTATAGGCCTGAAGATTCCATTGAGGGACGTAGGAGATTCCATGGGGTGAAAGAGTTATTTTTGTCTGACCATTATGATGTTCAAAGTGCTCATGCCATTGAAGGGAAGTGCGTTGTGCACTCTTTCAAGAACTATACCAAGCTTCAGGATGTAGCTGCTGAGGATTATTATTATAGGTTTGAGTACGAGGCTGCTACTGGAACTTTCACACCTGATCGTGTAGTTGTGTACTGCAAGTGCGAGATGCCTTATAACCCAGATGTACTTATGGTGCAGTGTGAGGAATGCAAGAATTGGTACCATCCTGCTTGTGTGGACATGACTGCTGAAGATGCAGAAAAGTTGGAGCAATATGTTTGCTCAGAATGTTCATTTGTTGATGAAATGAAGAAATCTCAAGCTAAAGTTGCTCTATCACCAAAAACTGATAGCGAGTTAAAATAA 633 0.425 MSKTKSSKKDLNSYTIKGTNKIVRVGDHVTMRPPDTNKAPYVARVEKIEPCRKNDVKVHVRWYYRPEDSIEGRRRFHGVKELFLSDHYDVQSAHAIEGKCVVHSFKNYTKLQDVAAEDYYYRFEYEAATGTFTPDRVVVYCKCEMPYNPDVLMVQCEECKNWYHPACVDMTAEDAEKLEQYVCSECSFVDEMKKSQAKVALSPKTDSELK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01078 210 SMART PHD_3 140 187 IPR001965 -
Vian11g01078 210 Gene3D - 1 132 IPR043151 -
Vian11g01078 210 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Vian11g01078 210 SMART BAH_4 21 136 IPR001025 GO:0003682
Vian11g01078 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 202 IPR013083 -
Vian11g01078 210 Pfam BAH domain 23 135 IPR001025 GO:0003682
Vian11g01078 210 SUPERFAMILY FYVE/PHD zinc finger 132 191 IPR011011 -
Vian11g01078 210 PANTHER OS08G0421900 PROTEIN 1 207 - -
Vian11g01078 210 Pfam PHD-finger 140 187 IPR019787 -
Vian11g01078 210 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Vian11g01078 210 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01078 Vian-Chr11 15552616 15554983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01078 30 132 Core DNA Replication Machinery Family AT4G14700 25.000 7.38e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian11g01078 BAH 6.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01078 K25868 - mnt:21397306 334.339