Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01075 ATGGGTAGCTTGCATGTGCTTGTTCCTCTCCTTTGTATGATGAGCAGTGCATTAGGAAAAGCAAGTGTTGATGATGGCATGCATGTGAAGATGAAGGGTACCATAGGAGTTATTACATACAACAATTCCCGTAACGGTAAAGAGGAAATAGTTGCTGTTAAGATGGCAATGGAAGATTTCTATCATTACAGCAATCAAAGTTTTGGTTTACAGATAAGAGACTCACATGGCGATCCTCTTCAGGCTGCCCTAGCAGCTAGAGATCTTATTGATACACAAAAAGTGGAAGCAATTATAGGGCCTGAAACATGGAAAGAGACAGCTTTAGTGGTTGATATTTGTAGCAAAAATATGACCCCAATTCTATCTTTAGCTGATGCAACTCCAAACTGGTCAACTTCGAAGTGGCCCTACCTAGTGCAAATCTCACCTAATCAGTTTAAGCAGATGAAAGCAGTAGCAGCTATTGTACAATCCTTTGAATGGTACAACGTTAACATAATATACGATGATACTGATTCTTCATCCACGAGAATGTTCTCTCATCTCTATAGTGATCTTAGTGTGTCAGGTGTTCATATAAGCAATGTTTTGGCCATCCCTCCGTTAAGCTCCTCTTCACTGCCTCAAGAACTAGAGAAACTTAGGAATGGCTATTGCAGAGTTTTTGTTGTTAATTTGTCAGTTCCTTTGGCCATAAACCTATTTCAAACAACAAAGAAATTGAAAATGATGGAGAAAGGTTATGTATGGATCGTTACGGATCCTCTTACAAGTCTTCTCCATTCATTGAACTCTTCCACTGTATCCTTAATGCAAGGGATAATTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCAATACGAGGACTTCTACTCTAAATTTAGAAAAAAATTTAGCTCAGAGAACCCTCATGAACTTAACAATGAGCCTGGGATATTTGCAGCACGTGCTTATGATGCTACTCGGACTCTTGCTCTATCCATGATCCAAACAACCAACAAAAAGGATCAAACGTTAATGGATAAGATTCTACTCAATAATTTTAATGGCTTAAGTGGAAAAATTCATTTCACTGACCAAAAGTTAGACCCTTCAGATACTTTTCAGATCATCAATGTGATGGGGAAAGATTATAAGGAAATTGGGTTCTGGACAAATGGACTAGGTTTCTCAAATACTATAGGCCAAAATGCTGCTTTCAATTCTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAATACCAAGAGGATGGATTCCAGCATTGGATAAACCACTAAGAATTGGGGTCCCCGTTTTGGCCACATTGAAACAATCCGTAACTGTAATTCACGACCAAACAGAAAATACCACCACGTTCCAAGGATTCACCATTGATATTTTTAGAGCAACTATGGAGTTGCTGCCCTATCACTTGCCCTACAAATTCTATCCTTTCAATGACACGTACGATAATTTGGTGAAGCAAGTTTATTTGAAGAATTTCGATGCAGTAATTGATGTGAGCATAATTTCATATCGATATCAGTATGCAGAATTCACTCAGCCATACACTGATCCAGGAGTGGTGATGGTAGTTCCCCTTAAATCAAATGTGGATCAGAGAGGTTGGTTATTTATGAAACCTTTTACAAAGACTATGTGGCTTTTAATACTGGCCATGGTTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCTATGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGTTAGATGGAGACAAGCTACATAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCAACTATAGATAATATTGATCAGCTACGGAATAGCAACGTCAGGGTTGGATACAGTTCAGGATCCTTTCTGAAACATTATGTGGAGAAAGTGTTGCGGTTCCACCCTGAAAACATGAGGAATTATGGAGAACTTGAAGAATATGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGTTGCCTTTCTGGAAGTTCCTGCAGCCAAAATTTTCCTAGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTTCAAAGTTGGAGGATTTGGGTTTGTATGTGATGCAACAATATTCTCATAG 2235 0.3937 MGSLHVLVPLLCMMSSALGKASVDDGMHVKMKGTIGVITYNNSRNGKEEIVAVKMAMEDFYHYSNQSFGLQIRDSHGDPLQAALAARDLIDTQKVEAIIGPETWKETALVVDICSKNMTPILSLADATPNWSTSKWPYLVQISPNQFKQMKAVAAIVQSFEWYNVNIIYDDTDSSSTRMFSHLYSDLSVSGVHISNVLAIPPLSSSSLPQELEKLRNGYCRVFVVNLSVPLAINLFQTTKKLKMMEKGYVWIVTDPLTSLLHSLNSSTVSLMQGIIGVKSYFPEIGLQYEDFYSKFRKKFSSENPHELNNEPGIFAARAYDATRTLALSMIQTTNKKDQTLMDKILLNNFNGLSGKIHFTDQKLDPSDTFQIINVMGKDYKEIGFWTNGLGFSNTIGQNAAFNSSMKELGQVLWPGRPWGIPRGWIPALDKPLRIGVPVLATLKQSVTVIHDQTENTTTFQGFTIDIFRATMELLPYHLPYKFYPFNDTYDNLVKQVYLKNFDAVIDVSIISYRYQYAEFTQPYTDPGVVMVVPLKSNVDQRGWLFMKPFTKTMWLLILAMVIYNGFILWMLERRHSPEITGSMLNQTGTMAWLALTPLIKLDGDKLHSNLSKMVMVVWLFVALIITQTYTANLASMLTAERLEPTIDNIDQLRNSNVRVGYSSGSFLKHYVEKVLRFHPENMRNYGELEEYAEAFRRKEIGVAFLEVPAAKIFLAKYCKEFIQAGPLFKVGGFGFVCDATIFS 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01075 744 Pfam Receptor family ligand binding region 52 375 IPR001828 -
Vian11g01075 744 Gene3D - 545 686 - -
Vian11g01075 744 SUPERFAMILY Periplasmic binding protein-like II 431 737 - -
Vian11g01075 744 SUPERFAMILY Periplasmic binding protein-like I 34 425 IPR028082 -
Vian11g01075 744 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 737 IPR015683 -
Vian11g01075 744 Pfam Ligand-gated ion channel 552 657 IPR001320 GO:0015276|GO:0016020
Vian11g01075 744 Gene3D - 42 368 - -
Vian11g01075 744 FunFam Glutamate receptor 428 542 - -
Vian11g01075 744 FunFam Glutamate receptor 149 310 - -
Vian11g01075 744 FunFam Glutamate receptor 543 681 - -
Vian11g01075 744 Gene3D - 145 387 - -
Vian11g01075 744 Gene3D - 429 544 - -
Vian11g01075 744 Pfam Bacterial extracellular solute-binding proteins, family 3 457 725 IPR001638 -
Vian11g01075 744 CDD PBP1_GABAb_receptor_plant 35 396 IPR044440 -
Vian11g01075 744 SMART GluR_14 434 739 IPR001320 GO:0015276|GO:0016020
Vian11g01075 744 CDD GluR_Plant 431 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01075 Vian-Chr11 15367941 15381251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01075 35 737 Ion Channels AT2G29120 33.153 4.29e-124 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01075 - - vra:106760680 1353.58