Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01074 ATGCAAGGGATAGTTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCAATACGAGGACTTTTACTATAAATTTAAAAAAAGGTTTAGCTCAGAGAACCCTCATGAGCTTAACAATGAGCCTGGGATATTTGCAGCACGTGCTTATGATGCAGTGTGGACTCTTTCTCTATCCATGATCCAAATAAAAAACAAAAAGGATCAAATGTTACTGGATAAGATTCTTCTTAATAATTTTACTGGCTTAAGTGGAAAAATTCATTTCACTGACCAAAGGTTAGATCCTTCAGATACTTTTCAGATCATCAATGTGATGGGGAAAGATTATAAGGAAATTGGGTTCTGGACAAATGGACTAGGTTTCTCAAATACTATAGGCCAAAATGCTGCTTTCAATTCTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAACTCCAAGAGGATGGATTCTAGCATTGGGTAAACCACTAAGAATTGGGGTCCCCGTTATGGACTCATTGAAACAATCCGTAACTGTAATTCAGGACCAAACAGAAAATACCACCACTTTCCAAGGATTTACCATTGATATTTTCAGAGCAACAATGGAGTTGCTTCCCTATCACTTGCCTTACAAATTCTATCCTTTCAATGGCACATTTGATAATTTGGTGAAGCAAGTTTACTTGAAGAATTTCGATGCAGTAATTGATGTAAGCATAATTTCATATCGATATCAGTATGCAGATTTCACTCAGCCATACACTGATCCAGGAGTGCTGATGGTAGTTCCCCTTAAATCAAAAATGGATCATAGAGCTTGGTTATTTATGAAACCTTTTACGAAGACTATGTGGGTTCTAATACTGGCCATGGTTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGGATTGACCCCTCTAATCAAGTTAGATGGAGACAAGCTACATAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCAACTGTAGATAATATTGATCGGCTACGGAATAGCTACATCAGGGTTGGATACAGTTCAGGATCCTTTGTGAAACATTATGTGGAGACAGTGTTGAAGTTCCACCCTGAAAACATGAGGAACTACGGAGAACTTGAAGAGTTTGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGTTGCCTTTCTGGAAGCTCCTGCAGCCAAATTTTTCCTAGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTACAAAGTTGGAGGAGTTGGATTTGCATTTCCAAGGGGGTCTCCATTGATTCTTCACGTAAACAAAGCACTTCTAGATTTAGTAGAAACCGGCAAGGTAAGTGAATTAGAGAACAAAATGCTTGGATCAGAGGAATGTGAAGACACAAAAGTAAATGGAGAAACTGCAAGTCTTAGCCCGAATAGCTTCTGGGTCCTCTTCATATTGACAGGAGGCACATCAACATTTTCTCTCTTGGTTTATGTTTTCTGTATGAATTATGCAAACAGCGAAGAGAAAACAATCTGGGGATTAACCACAATGATCATTCAACAATGTAACCATGCAAAGAGAAGAATGTCAGGAAAAGTAAGTGATATTGCAGAAAGCCCTACGACCTCTTCAACCACACATGTTACACCAACTCAAGTTTAA 1785 0.3938 MQGIVGVKSYFPEIGLQYEDFYYKFKKRFSSENPHELNNEPGIFAARAYDAVWTLSLSMIQIKNKKDQMLLDKILLNNFTGLSGKIHFTDQRLDPSDTFQIINVMGKDYKEIGFWTNGLGFSNTIGQNAAFNSSMKELGQVLWPGRPWGTPRGWILALGKPLRIGVPVMDSLKQSVTVIQDQTENTTTFQGFTIDIFRATMELLPYHLPYKFYPFNGTFDNLVKQVYLKNFDAVIDVSIISYRYQYADFTQPYTDPGVLMVVPLKSKMDHRAWLFMKPFTKTMWVLILAMVIYNGFILWMLERRHSPEITGSMLNQTGTMAWLGLTPLIKLDGDKLHSNLSKMVMVVWLFVALIITQTYTANLASMLTAERLEPTVDNIDRLRNSYIRVGYSSGSFVKHYVETVLKFHPENMRNYGELEEFAEAFRRKEIGVAFLEAPAAKFFLAKYCKEFIQAGPLYKVGGVGFAFPRGSPLILHVNKALLDLVETGKVSELENKMLGSEECEDTKVNGETASLSPNSFWVLFILTGGTSTFSLLVYVFCMNYANSEEKTIWGLTTMIIQQCNHAKRRMSGKVSDIAESPTTSSTTHVTPTQV 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01074 594 SMART GluR_14 163 500 IPR001320 GO:0015276|GO:0016020
Vian11g01074 594 FunFam Glutamate receptor 272 410 - -
Vian11g01074 594 Pfam Ligand-gated ion channel 500 529 IPR001320 GO:0015276|GO:0016020
Vian11g01074 594 Gene3D - 10 111 - -
Vian11g01074 594 Gene3D - 446 505 - -
Vian11g01074 594 MobiDBLite consensus disorder prediction 572 594 - -
Vian11g01074 594 SUPERFAMILY Periplasmic binding protein-like I 1 117 IPR028082 -
Vian11g01074 594 Pfam Bacterial extracellular solute-binding proteins, family 3 186 499 IPR001638 -
Vian11g01074 594 Gene3D - 159 270 - -
Vian11g01074 594 FunFam Glutamate receptor 157 271 - -
Vian11g01074 594 Gene3D - 271 418 - -
Vian11g01074 594 CDD GluR_Plant 160 498 - -
Vian11g01074 594 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 563 IPR015683 -
Vian11g01074 594 MobiDBLite consensus disorder prediction 576 594 - -
Vian11g01074 594 SUPERFAMILY Periplasmic binding protein-like II 184 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01074 Vian-Chr11 15288206 15292631 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01074 1 576 Ion Channels AT5G11210 31.452 5.99e-98 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01074 - - gmx:100799573 960.674