Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01072 ATGGGTAGCCTGGATGTGCTTGTTCCTCTCCTTTGTTTGATGAGCACTACTGCATTAGGAAAAACAACAGTTGATGATGGCATGCATGTGAAGATAAAGGGTACCATAGGAGTTATTACAGACAACAACTCTCGTAACGGTAAAGAGGAGATAGTTGCTGTTAAGATGGCAATGCAAGATTTCTATCATTCCAGCAATCAAAGTTTTGATTTACAGATAAGGGACTCACATGGCGATCCTCTTCAGGCTGCCCTAGCAGCTAGAGATCTTATTGATACACAGAAAGTGAAAGCAATTATAGGACCTGATACATGGAAAGAGACAACTTTAGTGGCTGATATTTGTAGCCAAAATATGACCCCAGTTCTATCTCTAGCTGATGCAACTCCAAATTGGTCAACTTTGAAGTGGCCCTACCTTGTGCAAATCTCACGTAATCAGTTTAAGCAGATGAAAGCAGTAGCAGCTATTGTACAATCCTTTGAATGGTACAACGTTAACATAATATACGATGATACTGATTCTTCATCCACGAGAATGTTCTCTCATCTCTATAGAGATCTCAGTGTGTCAGGTATTCATATAAGCAATGTTTTGACCATCCCTCCGTTAAGCTCCTCTTCACTGCCTCAAGAACTAGAGAAGCTTAGGAATAGCTATTGTAGAGTTTTTGTTGTTAATTTGTCAGTTCCTTTGGCCATAAACCTGTTTCAAACTGCAAAGGAATTGAAAATGATGGAGAAAGGTTATGTGTGGATCGTTACTGATCCTCTTACAAGTCTTGTCCATTCATTGAACTCTTCTACTATATCATCAATGCAAGGGATAGTTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCATTACAAGGACTTTTACTCTAAATTTAGAAAAAAGTTTAGCTCAGAGAACCCTCATGAGCTTAACAATGAGCCTGGGATATTTGCAGCACGTGCTTATGATGCAGTGTGGACTCTTTCTCTATCCATGATCCAAATAAAAAACAAAAAGGATCAAATGTTACTGGATAAGATTCTTCTTAATAATTTTACGGGCTTAAGTGGAAAAATTCATTTCACTGACCAAAAGTTAGATCCTTCAGATACTTTTCAGATCATCAATGTGATGGGGAAAGATTATAAGGAAATTGGGTTCTGGACAAATGGACTAGGTTTCTCAAATATTATAGGCCAAAATGCTACTTTCAATTTTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAACTCCAAGAGGATGGATTCCAGCATTGGATAAACCACTAAGAATTGGGGTCCCCGTTTTGGCAACATTGAAACAATTCATAACTGTAATTCAGGACCCAACAGAAAACACCACCACTTTCCGAGGATTCACCATTGATCTTTTTAGAGAAACTATGGAGTTGTTGCCCTATCACTTGCCCTACAAATTCTATCCTTTCAATGACACGTACGATAATTTGGTGAAGCAAGTTTATTTGAAGAATTTCGATGCAGTAATTGATGTGACTATAATTTCATATCGATATCAGTATGCAGAATTCAGTCAGCCATACACTGATCCAGGAGTGGTGATGGTAGTTCCCCTTAAATCAAAAGTGGATCATAGAGGTTGGTTATTTATGAAACCTTTTACAAAGACTATGTGGCTTTTAATACTGGCCATGGTTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGAGACAAGCTACATAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTACTGAACGGTTTGAACCAACTATAGATAATATTGATCAGCTACGGAATAGCAACATCAGGGTTGGATACAGTTCAGGATCCTTTCTGAAACATTATGTGGAGAAAGTGTTGCAGTTCCACCCTGAAAACATGAGGAACTATGGAGAACTTGAAGAGTATGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGCTGCCTTTCTGGAAGTTCCTGCAGCCAAAATTTTCCTAGCAAATTACTGTAAAGAGTTTATTCAAGCTGGGCCTTTGTACAAAATTGGAGGATTTGGATTTGCATTTGCAAGGGGGTCTCCATTGGTTCCTGATGTAAACAAAGCACTTCTAGATTTAGTAGAAACCGGCAAGGTACGTGAATTAGAGAACAAAATGCTTGCATCAGAGGAATGTGAAGACACAAAAGTAAATGGAGAAACTGAAAGTCTTAGCCCGAATAGCTTCTGGGTCCTCTTCATATTGACAGCAGGCACATCAACATTTTCTCTTTTGGTTTACGTTTTCCGGAGGAGGATGCGAAATCGACGACTCAGATTTGAAATCTCAGTGCCAAAGGCGACGAGAGCACAACGAAACTGTGGCGGAGGCGTGGCGGGACACGTGAGGGTTGTTGATGGTTGCGCCAGTGGAGTAGCCATGGGGGTTTCAGTGGCTAGCAGCAGAATCCTTTGTAGGTTGCGTGGGCTGGATTGGTAG 2562 0.4016 MGSLDVLVPLLCLMSTTALGKTTVDDGMHVKIKGTIGVITDNNSRNGKEEIVAVKMAMQDFYHSSNQSFDLQIRDSHGDPLQAALAARDLIDTQKVKAIIGPDTWKETTLVADICSQNMTPVLSLADATPNWSTLKWPYLVQISRNQFKQMKAVAAIVQSFEWYNVNIIYDDTDSSSTRMFSHLYRDLSVSGIHISNVLTIPPLSSSSLPQELEKLRNSYCRVFVVNLSVPLAINLFQTAKELKMMEKGYVWIVTDPLTSLVHSLNSSTISSMQGIVGVKSYFPEIGLHYKDFYSKFRKKFSSENPHELNNEPGIFAARAYDAVWTLSLSMIQIKNKKDQMLLDKILLNNFTGLSGKIHFTDQKLDPSDTFQIINVMGKDYKEIGFWTNGLGFSNIIGQNATFNFSMKELGQVLWPGRPWGTPRGWIPALDKPLRIGVPVLATLKQFITVIQDPTENTTTFRGFTIDLFRETMELLPYHLPYKFYPFNDTYDNLVKQVYLKNFDAVIDVTIISYRYQYAEFSQPYTDPGVVMVVPLKSKVDHRGWLFMKPFTKTMWLLILAMVIYNGFILWMLERRHSPEITGDKLHSNLSKMVMVVWLFVALIITQTYTANLASMLTTERFEPTIDNIDQLRNSNIRVGYSSGSFLKHYVEKVLQFHPENMRNYGELEEYAEAFRRKEIGAAFLEVPAAKIFLANYCKEFIQAGPLYKIGGFGFAFARGSPLVPDVNKALLDLVETGKVRELENKMLASEECEDTKVNGETESLSPNSFWVLFILTAGTSTFSLLVYVFRRRMRNRRLRFEISVPKATRAQRNCGGGVAGHVRVVDGCASGVAMGVSVASSRILCRLRGLDW 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01072 853 CDD GluR_Plant 432 748 - -
Vian11g01072 853 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 794 IPR015683 -
Vian11g01072 853 PIRSF IGluLR_plant 3 587 IPR017103 -
Vian11g01072 853 PIRSF IGluLR_plant 582 816 IPR017103 -
Vian11g01072 853 SMART GluR_14 435 750 IPR001320 GO:0015276|GO:0016020
Vian11g01072 853 FunFam Glutamate receptor 150 311 - -
Vian11g01072 853 CDD PBP1_GABAb_receptor_plant 36 395 IPR044440 -
Vian11g01072 853 Gene3D - 42 369 - -
Vian11g01072 853 Gene3D - 430 545 - -
Vian11g01072 853 FunFam Glutamate receptor 429 543 - -
Vian11g01072 853 Pfam Bacterial extracellular solute-binding proteins, family 3 458 746 IPR001638 -
Vian11g01072 853 SUPERFAMILY Periplasmic binding protein-like I 35 389 IPR028082 -
Vian11g01072 853 Pfam Receptor family ligand binding region 53 376 IPR001828 -
Vian11g01072 853 Pfam Ligand-gated ion channel 747 779 IPR001320 GO:0015276|GO:0016020
Vian11g01072 853 Gene3D - 546 586 - -
Vian11g01072 853 Gene3D - 587 666 - -
Vian11g01072 853 Gene3D - 146 388 - -
Vian11g01072 853 SUPERFAMILY Periplasmic binding protein-like II 432 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01072 Vian-Chr11 15213457 15222833 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01072 36 798 Ion Channels AT2G29110 32.683 3.68e-135 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01072 - - vra:106760680 1330.47