Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01052 ATGGCTCCAAGGGATAGAACCACCGCACTCGCCGGACCCGGCCCAAGCCCAGCGCAGGCCCACAAAGAGATCCGTTACAGGGGCGTCAGGAAACGCCCATGGGGCCGTTACGCCGCCGAGATCCGCGACCCTGGCAAGAAAACCCGCGTCTGGCTCGGCACCTTCGACACAGCCGAAGAAGCCGCAAGAGCCTACGACGCCGCCGCTCGCGATTTCCGAGGCGCCAAGGCAAAGACCAATTTCCCCACACCTTCCGAACTTCTCGTAAACAACCATAGCAGTAGCAACAACAACAGCGCGCGTAGCCCTAGCCAGAGCAGCACCCTGGACTCTTCCTCCCCGCCGCCACCGCCTCCTCTGCTAGACCTCACGCTCACACCTCTCACCGCCTCGGTCCTCCCTGCCGCACGCCCAGTCCTTTTCTTCGATGCTTTCGCCCGTGCGGACACAGTTATCGCCGTCGGGCGCCGGGACACCTGTGGCTTCGGACGTCCGGCGACCGATTTCCGCCGCAGTGACTCAAATTCCGAGCGACGCGGGCTCCTGGATCTTGATCTCAACGTGGCTCCTCTCCCAGAGGTTGCAGGGTGTTCTCGTGATTCGGAAACCGGCTTATCCTATCCCGTTGCGGCGCGGATCTCAATGGCGTGTGGAATCGAACGGCTGGTGGAGTGGTCCCACAGACTAGAGATTGAAGAGAGTCCGCAGGCGGCACCGACGGCAGAAACGCTGCGTGAAAAGGAAGAGCGAATCAGAAGTGGGCGTGTCTGGCGGTGGGTCCCACGTGGGCATTCCGTGTTGACTATGTGGCTGTCGGAGTTGATGTTGTCTTCACGTGATGTTTCTGCGCCCCCATCTTTCCTGTGTCTCCACCTTTTCCCACTCTTTCTTCTTCGTCCTTTCCAATTCTCTCTTACATTTTTTATAACTTTTTTCCTCGTTGCTTCACATTAA 954 0.5901 MAPRDRTTALAGPGPSPAQAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPTPSELLVNNHSSSNNNSARSPSQSSTLDSSSPPPPPPLLDLTLTPLTASVLPAARPVLFFDAFARADTVIAVGRRDTCGFGRPATDFRRSDSNSERRGLLDLDLNVAPLPEVAGCSRDSETGLSYPVAARISMACGIERLVEWSHRLEIEESPQAAPTAETLREKEERIRSGRVWRWVPRGHSVLTMWLSELMLSSRDVSAPPSFLCLHLFPLFLLRPFQFSLTFFITFFLVASH 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01052 317 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 182 - -
Vian11g01052 317 MobiDBLite consensus disorder prediction 83 109 - -
Vian11g01052 317 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Vian11g01052 317 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Vian11g01052 317 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Vian11g01052 317 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Vian11g01052 317 MobiDBLite consensus disorder prediction 77 122 - -
Vian11g01052 317 MobiDBLite consensus disorder prediction 1 29 - -
Vian11g01052 317 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Vian11g01052 317 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vian11g01052 317 FunFam Ethylene-responsive transcription factor 2 25 83 - -
Vian11g01052 317 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vian11g01052 317 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01052 Vian-Chr11 14649919 14651816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01052 9 143 AP2-EREBP Transcription Factor Family AT3G15210 61.688 1.52e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian11g01052 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01052 K09286 - gmx:100813652 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01052 11 14649919 14651816 Vian6g01753 6 34976500 34977162 ECH
Vian11g01052 11 14649919 14651816 Vian11g01052 11 14649919 14651816 ECH