Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01051 ATGTCCACCATCATCTGCTACGCTACTGTGATTCCATACTTCCTTACTAATTTAATGAAGCGTTCGCGCAGAGACAATGACTACGGCGTCAGCGACGCCGTGGGAGGTGGGAAAAATAAAACAAGTGAGCAAGTAGAACCCCACCACTCTCGTGATCATACGCTCCCAGTTCCTCAAACTCAAGAATCTCATCAACGCTCCGCCGCGGACGGCCGCGAAGACCTTGACGAAGCCGCAACAGACGGCAAGACGTTCGATGACCTCGGCCTGGAGGAGTGGGTCGTTGGTACGTGCCGGGAGCTTGGAATGCGGATGCCACGACACGTGCAGCAGCGTTGCATACCGCCTGTGCTAGAGGGCCGGCACGTGCTTGGCATCGACGAGACTGGGAGCGGGAAAACGGCGGCCTTCGCTCTTCCTATCCTGCATCGACTCGCTGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACGCCCACGCGTGAACTCGCGTTCCAGCTCGCGGAGCAGTTCCGCGCTCTGGGCTCTGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGACGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACACCTGGGAGAATCCACGTCTTGCTCCGTGATAACCCTGATATTTCTCCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTTTGGATGCTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTCTTTTCTGCGACAAGTACAAGTAATCTGCAAAAGTTGCGAGAACGTTACCAAGATAAGATGTATGTCTACGAGGCATATGAAGGTTTTAAAACAGTTGAATCACTTAAGCAACAGGTGATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCAAAAATGGAGGATATGGGAATCCGGTCTGCCATCGTGTTTATCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTGCTTGATCAAGAAGCAGCAGCTCTTTATTCATTCAAATCACAAACGCAGAGGCTTGAAGCTCTTCATCAATTTAAATCAGGAAAGGTTTCTGTACTGCTAGCAACTGATGTTGCCAGTCGTGGATTGGATATTCCTACAGTTGACCTTGTTATCAACTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTTGGTCGAACGGCAAGAGCCGGTAGAGGTGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCACTTATTGAGAAACAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTGCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGAAGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAACCAGAAACTGAAAATGCTTGCAGAGAAAGGACTGTTGAAGAAAAATAAAAGGAGAAAAAAAAGTTTTCAATGCTAA 1551 0.4687 MSTIICYATVIPYFLTNLMKRSRRDNDYGVSDAVGGGKNKTSEQVEPHHSRDHTLPVPQTQESHQRSAADGREDLDEAATDGKTFDDLGLEEWVVGTCRELGMRMPRHVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQTKDLVARPHLVIATPGRIHVLLRDNPDISPVFSRTKFLVLDEADRVLDACFQEELKFIFQCLPENRQNLFFSATSTSNLQKLRERYQDKMYVYEAYEGFKTVESLKQQVIFIPKKVKDVYLMHILSKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSVLLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALALMKKVFSAKNVAEMRMIEDGFEEKAKERKNQKLKMLAEKGLLKKNKRRKKSFQC 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01051 516 CDD SF2_C_DEAD 299 431 - -
Vian11g01051 516 Gene3D - 48 287 IPR027417 -
Vian11g01051 516 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 233 241 IPR000629 -
Vian11g01051 516 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 111 IPR014014 GO:0003724
Vian11g01051 516 SMART helicmild6 341 422 IPR001650 -
Vian11g01051 516 SMART ultradead3 102 302 IPR014001 -
Vian11g01051 516 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 59 508 - -
Vian11g01051 516 Pfam DEAD/DEAH box helicase 108 276 IPR011545 GO:0003676|GO:0005524
Vian11g01051 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 461 IPR001650 -
Vian11g01051 516 MobiDBLite consensus disorder prediction 29 81 - -
Vian11g01051 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 442 IPR027417 -
Vian11g01051 516 MobiDBLite consensus disorder prediction 66 81 - -
Vian11g01051 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 287 IPR014001 -
Vian11g01051 516 Pfam Helicase conserved C-terminal domain 326 422 IPR001650 -
Vian11g01051 516 Gene3D - 294 468 IPR027417 -
Vian11g01051 516 CDD DEADc_DDX49 85 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01051 Vian-Chr11 14614090 14621986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01051 83 439 Eukaryotic Initiation Factors Gene Family AT3G13920 32.493 2.13e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01051 K14778 - gmx:100798597 751.51