Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian11g01051 | ATGTCCACCATCATCTGCTACGCTACTGTGATTCCATACTTCCTTACTAATTTAATGAAGCGTTCGCGCAGAGACAATGACTACGGCGTCAGCGACGCCGTGGGAGGTGGGAAAAATAAAACAAGTGAGCAAGTAGAACCCCACCACTCTCGTGATCATACGCTCCCAGTTCCTCAAACTCAAGAATCTCATCAACGCTCCGCCGCGGACGGCCGCGAAGACCTTGACGAAGCCGCAACAGACGGCAAGACGTTCGATGACCTCGGCCTGGAGGAGTGGGTCGTTGGTACGTGCCGGGAGCTTGGAATGCGGATGCCACGACACGTGCAGCAGCGTTGCATACCGCCTGTGCTAGAGGGCCGGCACGTGCTTGGCATCGACGAGACTGGGAGCGGGAAAACGGCGGCCTTCGCTCTTCCTATCCTGCATCGACTCGCTGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACGCCCACGCGTGAACTCGCGTTCCAGCTCGCGGAGCAGTTCCGCGCTCTGGGCTCTGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGACGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACACCTGGGAGAATCCACGTCTTGCTCCGTGATAACCCTGATATTTCTCCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTTTGGATGCTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTCTTTTCTGCGACAAGTACAAGTAATCTGCAAAAGTTGCGAGAACGTTACCAAGATAAGATGTATGTCTACGAGGCATATGAAGGTTTTAAAACAGTTGAATCACTTAAGCAACAGGTGATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCAAAAATGGAGGATATGGGAATCCGGTCTGCCATCGTGTTTATCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTGCTTGATCAAGAAGCAGCAGCTCTTTATTCATTCAAATCACAAACGCAGAGGCTTGAAGCTCTTCATCAATTTAAATCAGGAAAGGTTTCTGTACTGCTAGCAACTGATGTTGCCAGTCGTGGATTGGATATTCCTACAGTTGACCTTGTTATCAACTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTTGGTCGAACGGCAAGAGCCGGTAGAGGTGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCACTTATTGAGAAACAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTGCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGAAGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAACCAGAAACTGAAAATGCTTGCAGAGAAAGGACTGTTGAAGAAAAATAAAAGGAGAAAAAAAAGTTTTCAATGCTAA | 1551 | 0.4687 | MSTIICYATVIPYFLTNLMKRSRRDNDYGVSDAVGGGKNKTSEQVEPHHSRDHTLPVPQTQESHQRSAADGREDLDEAATDGKTFDDLGLEEWVVGTCRELGMRMPRHVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQTKDLVARPHLVIATPGRIHVLLRDNPDISPVFSRTKFLVLDEADRVLDACFQEELKFIFQCLPENRQNLFFSATSTSNLQKLRERYQDKMYVYEAYEGFKTVESLKQQVIFIPKKVKDVYLMHILSKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSVLLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALALMKKVFSAKNVAEMRMIEDGFEEKAKERKNQKLKMLAEKGLLKKNKRRKKSFQC | 516 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian11g01051 | 516 | CDD | SF2_C_DEAD | 299 | 431 | - | - | |
Vian11g01051 | 516 | Gene3D | - | 48 | 287 | IPR027417 | - | |
Vian11g01051 | 516 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 233 | 241 | IPR000629 | - | |
Vian11g01051 | 516 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 83 | 111 | IPR014014 | GO:0003724 | |
Vian11g01051 | 516 | SMART | helicmild6 | 341 | 422 | IPR001650 | - | |
Vian11g01051 | 516 | SMART | ultradead3 | 102 | 302 | IPR014001 | - | |
Vian11g01051 | 516 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 59 | 508 | - | - | |
Vian11g01051 | 516 | Pfam | DEAD/DEAH box helicase | 108 | 276 | IPR011545 | GO:0003676|GO:0005524 | |
Vian11g01051 | 516 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 461 | IPR001650 | - | |
Vian11g01051 | 516 | MobiDBLite | consensus disorder prediction | 29 | 81 | - | - | |
Vian11g01051 | 516 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 151 | 442 | IPR027417 | - | |
Vian11g01051 | 516 | MobiDBLite | consensus disorder prediction | 66 | 81 | - | - | |
Vian11g01051 | 516 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 114 | 287 | IPR014001 | - | |
Vian11g01051 | 516 | Pfam | Helicase conserved C-terminal domain | 326 | 422 | IPR001650 | - | |
Vian11g01051 | 516 | Gene3D | - | 294 | 468 | IPR027417 | - | |
Vian11g01051 | 516 | CDD | DEADc_DDX49 | 85 | 288 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian11g01051 | Vian-Chr11 | 14614090 | 14621986 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian11g01051 | 83 | 439 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 32.493 | 2.13e-55 | 189 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian11g01051 | K14778 | - | gmx:100798597 | 751.51 |