Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01050 ATGAAAGGCTTCTGCAAGTATGAAGCATGCATTAGATCTTTGACCAGATCATTGACATCAGTTACAAAAATTATTCAAAATTCTTGTGAAGACCTTTTTGGTTGTGTTCATGATCAAGGTGTTGCTTTTGTTTATAGTCATGTTCCAATTCCTTCCCGTGTTGTTCTTACCATCAACAATACTCAACTTCTTTCCCCTCAAAACATTACTTTATCCAATCATATTGGGTCTGGTTGGGTTCAAACGTGTAACAACTCAAATCAATTATCTTCTTACAAATTGAAGTCAAATCGCAAACGATACCAGCGTTGGACAGAAAATGAACCCAGACTATTTCTTTTTGGACTTAAAGCTTGTGGTGAAGGACATTGGAAAGGCATTTCTGAATTATACGTTGTATCAAAGTCTCCATCTCAAGTTTCTATTGAGCCGTCCAAACTTGTTCTTCCTGCTCCTATAATGTTGTTGGAGGAAATATCATCCAAAGATGATGTGTTGAACTGTGCAAATCACATAGGAAAATGCAATAATTCAATTGTCACAGTTCCTCGGAAGAAATGCAAGCATTGGACTGAAGATGAACACAAGTTATTTGTCCTCGGACATGCCAAATACCAAGAAAAATGGAAAGAAGTTTCAAAAAATTACGTCCCCTCAAAATCTTCAACCCAAATTGCAAGTCATGCTCAAAAATACTTCCTTCGTCAAAACCTTCCAGAGAACAAGAGAAAAAGGAAAAGCATTCATGACATAACAGTGCAGGACATTGATGCTGAAATGAAAAGTAGAACAAAATATGCTCAGCTTATTATAGAAAATCTGATTCTTTAA 831 0.3598 MKGFCKYEACIRSLTRSLTSVTKIIQNSCEDLFGCVHDQGVAFVYSHVPIPSRVVLTINNTQLLSPQNITLSNHIGSGWVQTCNNSNQLSSYKLKSNRKRYQRWTENEPRLFLFGLKACGEGHWKGISELYVVSKSPSQVSIEPSKLVLPAPIMLLEEISSKDDVLNCANHIGKCNNSIVTVPRKKCKHWTEDEHKLFVLGHAKYQEKWKEVSKNYVPSKSSTQIASHAQKYFLRQNLPENKRKRKSIHDITVQDIDAEMKSRTKYAQLIIENLIL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01050 276 CDD SANT 190 233 IPR001005 -
Vian11g01050 276 Pfam Myb-like DNA-binding domain 189 233 IPR001005 -
Vian11g01050 276 PANTHER TRANSCRIPTION FACTOR KUA1 59 140 - -
Vian11g01050 276 ProSiteProfiles SANT domain profile. 185 237 IPR017884 -
Vian11g01050 276 SMART sant 186 235 IPR001005 -
Vian11g01050 276 SMART sant 100 150 IPR001005 -
Vian11g01050 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 237 IPR017930 -
Vian11g01050 276 ProSiteProfiles Myb-like domain profile. 182 233 IPR001005 -
Vian11g01050 276 Gene3D - 189 237 - -
Vian11g01050 276 SUPERFAMILY Homeodomain-like 183 237 IPR009057 -
Vian11g01050 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 185 236 IPR006447 GO:0003677
Vian11g01050 276 SUPERFAMILY Homeodomain-like 98 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01050 Vian-Chr11 14598792 14600254 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian11g01050 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01050 - - vra:106754349 193.356