Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01049 ATGGGTGGTGTGGACCCAGATCCGGTTCTGATTTTGAAGTTGGGGCTGTGCTCTCAAAATCCGAGCATGATGTGTCAAACTCCCATGGCATCAATCTCTCACACACCCCCACCTAGCATCACCTTCCCCTTCTTGCTTGATAGTGATGGATTCGATTGGATTGATGATGGATGGATGGATGCGATGGCTGGTGCTCCTTCTTCCTTTTCTCTGATGGACTCCTCCTACCATCACTTGGACCACACTGAAGCTCATCTGCCACCAGGCTTCAGGTTCCATCCCACTGACGAGGAGCTCATAACGTACTACCTTCTCAAAAAGGTTCTAGACAGCAACTTCACTGGTAGAGCCATAGCTGAAGTAGACCTTAACAAAAGTGAACCATGGGAGCTCCCAGAGAAAGCTAAAATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCAACTGGGTTACGAACCAATAGGGCTACCGAAGCTGGTTACTGGAAAGCCACTGGGAAAGATAGAGAGATTTACAGCTCCAAAACTTGTTCTTTGGTCGGGATGAAGAAAACCTTGGTTTTCTACCGCGGTAGAGCTCCCAAGGGGGAGAAAAGTAACTGGGTCATGCATGAGTACCGGCTGGAAGGCAAATTTGCTTACCATTACCTTTCTCGCAACTCCAAGGACGAGTGGGTCATATCTCGCGTGTTCCAAAAGAGCAACACAACCAACGGAGGCTCAGTTATGTCTGCTTCGAGTGGCTCCAAGAAAACGAGAATGAACACCACCAACAGCACTCTCTGCCCAGAACCAAGTTCACCCTCTTCAGTTTACCTTCCGCCTCTTCTGGACTCTTCTCCCTACACCACAACAACCCCAGTAAACTTCACTGACCGTAACAACTGTTCCTACGACAGCACCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATTGCTGCAGCCACCGCTGCTGTTGTCTCCCCCAACAACTTCACCAATGCAAGCTTCGACCTTCCACCATCTCAGCCTCTAGGAGTGGATCCCTTCGCTAGGTTTCAGAGAAACGTTGGTCTCTCCGCCTTCCCAAGTTTGAGGTCACTGCAAGACAACCTCCAGCTACCGTTCTTTTTTCCTCCGGCAGCACAGCCCTTGGGCGGTGCCTCCCGTGAACTCCTCTGGCCGATGCCGGAGGAGCAAAGGCTGGTCGATGCGGCCCCCAACATTCCACTGGGTGTGTCGGAGCTTGATTGTATGTGGGGATACTAG 1266 0.5095 MGGVDPDPVLILKLGLCSQNPSMMCQTPMASISHTPPPSITFPFLLDSDGFDWIDDGWMDAMAGAPSSFSLMDSSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSNFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTTNGGSVMSASSGSKKTRMNTTNSTLCPEPSSPSSVYLPPLLDSSPYTTTTPVNFTDRNNCSYDSTTKKEHVSCFSTIAAATAAVVSPNNFTNASFDLPPSQPLGVDPFARFQRNVGLSAFPSLRSLQDNLQLPFFFPPAAQPLGGASRELLWPMPEEQRLVDAAPNIPLGVSELDCMWGY 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01049 421 Pfam No apical meristem (NAM) protein 87 213 IPR003441 GO:0003677|GO:0006355
Vian11g01049 421 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 84 294 - -
Vian11g01049 421 MobiDBLite consensus disorder prediction 243 274 - -
Vian11g01049 421 ProSiteProfiles NAC domain profile. 86 238 IPR003441 GO:0003677|GO:0006355
Vian11g01049 421 SUPERFAMILY NAC domain 82 238 IPR036093 GO:0003677|GO:0006355
Vian11g01049 421 Gene3D NAC domain 95 243 IPR036093 GO:0003677|GO:0006355
Vian11g01049 421 FunFam NAC domain-containing protein 100-like 95 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01049 Vian-Chr11 14541065 14545833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01049 72 421 NAC Transcription Factor Family AT5G53950 54.103 1.71e-120 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian11g01049 NAM 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01049 - - vun:114185732 655.595