Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01032 ATGGAGCTTCAGATACGTGTTTTTTGTCTCTTCTTGTTTCTCCTGACTCTGCTCTCGGGGTCTCAGGCCTACACCTTCTACGTTGGTGCGAAAGATGGGTGGGTTTTGTACCCTTCTGAGAATTACAATCACTGGGCTGAAAGGATGAGGTTCCAAGTCAGTGACACTCTTGTTTTCAAGTACAAGAAGGGATCGGACTCGGTTTTGGTGGTGAACAAGGAGGATTACGAGAAATGTAACAAGAAGAACCCGATCAAGAAGTTTGAGGATGGTGCCTCGGAGTTTCAGTTTGATCGGTCTGGTCCCTTTTATTTCATCAGTGGAAAAGATGATTATTGTGAGAAGGGTCAGAAACTTATCATTGTTGTGTTGGCTGTGAGGGAGCCTCCTCCATATTCTCCAACGCCACCAAATCTTCCACCTCCTCCAAAAACTCCTCCCCCTTCCCACCAACCTTTTGTCCCAATTCCTCCAACCATTCCCTCTCCTATTTCTCAACCCCCCTACACTCCTTCCCCTTCCCATCAACCTCCCTTTCTTCCAATAGCACCATCGCCATTTTCTCAATCACCTCATGTGCCACCACCACCCAAAACTCCATCTCCTACTTCCCAACCACCTTACATTTCACCACCGCCAAAAACTCCTTCCCCCACCTCCCAACCTCCTTACATTTCCACACCGCCATCCACCGCCCCTTCTCCCATTTCCCAACCTCCCTACATTCCAAAACCTCCAAACACTCCTTCCCCAACATCTCAACCACCCTACCCTAATGCCCCAACTCCATATCTCAATTCCCCCATCACTCAACCCCCATCATCCGCATCATCTCCAACTTCCTCATCACCCTATCCATCCACCATCCCTCCATCATACCCACCTTCCCCCTTCGCTCCGGCTACTACACCCTCCACTGCGTCACCACCATTGCCGTCTCCGGCAACCGCCACTTCTCCTCCGGCACCACTACCGGCAGCAACAAGCCCATCGCCATCGTCTTCGTCGGGATCGTCCTCCAACGAAACGACGCCGTCCCGGCCAAACGGCGCGTCGTCTATATCTGAATCGCGTTTTGGAGTGTACTCACTAACCATTCTGGTCGGTGCTGCTCTCAGTAACATTCTTGGTTAG 1134 0.5115 MELQIRVFCLFLFLLTLLSGSQAYTFYVGAKDGWVLYPSENYNHWAERMRFQVSDTLVFKYKKGSDSVLVVNKEDYEKCNKKNPIKKFEDGASEFQFDRSGPFYFISGKDDYCEKGQKLIIVVLAVREPPPYSPTPPNLPPPPKTPPPSHQPFVPIPPTIPSPISQPPYTPSPSHQPPFLPIAPSPFSQSPHVPPPPKTPSPTSQPPYISPPPKTPSPTSQPPYISTPPSTAPSPISQPPYIPKPPNTPSPTSQPPYPNAPTPYLNSPITQPPSSASSPTSSSPYPSTIPPSYPPSPFAPATTPSTASPPLPSPATATSPPAPLPAATSPSPSSSSGSSSNETTPSRPNGASSISESRFGVYSLTILVGAALSNILG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01032 377 ProSiteProfiles Phytocyanin domain profile. 24 125 IPR003245 GO:0009055
Vian11g01032 377 MobiDBLite consensus disorder prediction 329 356 - -
Vian11g01032 377 CDD OsENODL1_like 24 124 IPR041846 -
Vian11g01032 377 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Vian11g01032 377 FunFam Early nodulin-like protein 1 23 128 - -
Vian11g01032 377 MobiDBLite consensus disorder prediction 269 283 - -
Vian11g01032 377 MobiDBLite consensus disorder prediction 131 356 - -
Vian11g01032 377 Gene3D - 22 127 IPR008972 -
Vian11g01032 377 PRINTS Proline rich extensin signature 148 164 - -
Vian11g01032 377 PRINTS Proline rich extensin signature 165 182 - -
Vian11g01032 377 PRINTS Proline rich extensin signature 186 211 - -
Vian11g01032 377 PRINTS Proline rich extensin signature 125 146 - -
Vian11g01032 377 Pfam Plastocyanin-like domain 34 117 IPR003245 GO:0009055
Vian11g01032 377 MobiDBLite consensus disorder prediction 131 268 - -
Vian11g01032 377 PANTHER BLUE COPPER PROTEIN 24 212 IPR039391 GO:0009055
Vian11g01032 377 MobiDBLite consensus disorder prediction 284 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01032 Vian-Chr11 14008005 14009224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01032 1 199 Phytocyanin Superfamily AT5G53870 47.087 7.48e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01032 - - var:108333029 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01032 11 14008005 14009224 Vian11g01032 11 14008005 14009224 ECH