Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01022 ATGTGTTGTTGTACTTGGCCTACGTGCAACTCTAGCTGGATGAAGATGGAGGGTTCTTCAGGGTCTGCTTTTCAGAATTCTGGCAGTTCCAGGGCTTTGAACAGTTCTGGAGTCTCGGATAGGAACCAAAGAGTTCATTATCCTGAAAGGAACCCCTTCTCGGGTGAGGCATCTCAGGATTCGGGGTACAAGAAGGAAAGGGAAAGGGTTCCGTTGGGTCAAGGTGATCAGGCAAAAAATTTGGGTGGTGGGTTTTCTGGGTTGTGTGAAGATGAAGTTGAGGTTGACCCCTTTTATGGTGCTGTGGAATGGGGTGATATTAGCTTGAGGCAGTGGTTGGATAAACCAGAACGATCGGTGGATGCCTTTGAATGCTTGCACATATTTAGACAAATAGTAGAAATTGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGTTTTGTCATGTCTTCTTTCAACCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGCTCCGATTCTTTAGGAGAAGGATTAAACGACCAAGGTGGTGAGATCAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCAGCAGAGCTTGGGAAGTGAAGATTTTGTGACTGTCAAGACATCTACAACCACTGCTCGCTCAGATTCTAGTTGCATGCTGTCGAGTGCTGTGTATGCAGCTCGTGCATCTTTGATAGAAGAAACAGAAGAACATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTGGAAGGGAAGAAGCAATCATTTCCAATGAAGCAGATACTGCTAATGGAGATGAGTTGGTACACTAGTCCTGAAGAGGTTGCTGGTGACTCTAGTTCTTGTGCTTCAGATGTTTATCGATTAGGGGTTCTTCTTTTTGAGCTATTTTGTCCGCTAAGCTCGAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACATAGGGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCCAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTGGGGGAGTTGTTGCAGAGTGAGTTCCTTAATGAACAAAGAGATGATATGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGGATTGAGGATAAGGAGTTGCTGCTAGAATTCCTTTTGTTACTTCAACAGAGGAAACAGGAAGTTGCTGAGAAGTTGCAACACACTATCTCTTTTCTGTGCTCAGATATTGAAGAAGTGACTAAGCAGAAAATTAGATTTAAAGAGATTACTGGTACTGAACTGGGGAGTGATGATCGTTCAGCATCAAGTTTCCCATCAATGACAGTTGTGGACAGTGATGATTCTGCATATGAAGGGACTAGAAAACGAGTCAGACTAGGGACTCATGTTAAAAACAATGAGGAATGTGATGATGATGATGATGATGATGGAGGAGATGATCAGAAAAGTAACGGAAGTTTTCTTTCAAAAAGTTCTCGGTTAATGAAGAACTTTAAGAAACTCGAGTCAGCATACTTTTTAACACGATGTAGACCGGCGTATTCCTCTGGGAAACTGGTGAGTAGGCATCCTCCTCTAGCAAGTGATGGTAGAGGTTCTGTTGTTTTGACTGAAAGAAGTTGCATCAATGACGTGAAATCAAAAGAGCAGTGCAGGGAGGGTGCAAGTGCTTGGATAAATCCTTTTTTAGAGGGATTGTGCAAGTATTTATCATTCAGCAAGATAAAGGTTAAGGCTGACCTAAAACAAGGGGATCTTTTGCATTCATCCAACCTTGTATGCTCACTCAGTTTTGATCGAGATGGAGAATTTTTTGCTACTGCTGGTGTGAATAAGAAGATTAAAGTGTTTGAATGTGATTCAATCATAAATGAGGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTTTATGTTGGAATGCATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTGCAGTTGTGGGATGTGACAAGAAGCCAAGTACTCTCTGAGATGAGGGAGCACGAGCGGCGCGTCTGGTCCATTGATTTCTCATCAGCAGATCCAACAATGTTGGCAAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGAACCATCAAAACCAAGGCAAATGTATGCTGTGTTCAGTTCCCTCTGGATTCTTCTCGTTTCCTTGCATTTGGTTCAGCAGATCATAGGATATATTACTATGATCTTCGCAACCTTAAAATGCCGCTCTGTACTTTGGTTGGACATAACAAGACTGTCAGCTACATCAAGTTTGTAGACACTGTCAACCTTGTCTCAGCTTCCACAGATAACACTTTGAAGCTTTGGGATTTGTCTACGTGTGCATCTCGAGTTATAGACTCACCGATTCAATCTTTCACAGGTCACGTCAATGTTAAGAACTTTGTGGGATTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGGTTTTCATATACCACAAAGCCTTCCCAATGCCTGCACTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCCGGTAACGAAGTGGATGACGCGGCGCAATTCGTGTCATCCGTTTGTTGGCGGGGTCAGTCGTCCACCTTGCTCGCTGCAAATTCGACAGGGAATGTCAAAATTCTGGAGATGGTTTAG 2733 0.4296 MCCCTWPTCNSSWMKMEGSSGSAFQNSGSSRALNSSGVSDRNQRVHYPERNPFSGEASQDSGYKKERERVPLGQGDQAKNLGGGFSGLCEDEVEVDPFYGAVEWGDISLRQWLDKPERSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNDQGGEIKTPTSLCPHDMHQQSLGSEDFVTVKTSTTTARSDSSCMLSSAVYAARASLIEETEEHKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVAGDSSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLQQRKQEVAEKLQHTISFLCSDIEEVTKQKIRFKEITGTELGSDDRSASSFPSMTVVDSDDSAYEGTRKRVRLGTHVKNNEECDDDDDDDGGDDQKSNGSFLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKLVSRHPPLASDGRGSVVLTERSCINDVKSKEQCREGASAWINPFLEGLCKYLSFSKIKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSLCWNAYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSSRFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSASTDNTLKLWDLSTCASRVIDSPIQSFTGHVNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGNEVDDAAQFVSSVCWRGQSSTLLAANSTGNVKILEMV 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01022 910 MobiDBLite consensus disorder prediction 471 497 - -
Vian11g01022 910 SMART WD40_4 869 908 IPR001680 GO:0005515
Vian11g01022 910 SMART WD40_4 767 805 IPR001680 GO:0005515
Vian11g01022 910 SMART WD40_4 681 721 IPR001680 GO:0005515
Vian11g01022 910 SMART WD40_4 724 763 IPR001680 GO:0005515
Vian11g01022 910 SMART WD40_4 593 628 IPR001680 GO:0005515
Vian11g01022 910 SMART WD40_4 639 678 IPR001680 GO:0005515
Vian11g01022 910 SMART WD40_4 814 853 IPR001680 GO:0005515
Vian11g01022 910 ProSiteProfiles Protein kinase domain profile. 9 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01022 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 774 808 IPR001680 GO:0005515
Vian11g01022 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 688 725 - -
Vian11g01022 910 PANTHER PROTEIN SPA1-RELATED 2 54 910 IPR044630 GO:0009640
Vian11g01022 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 774 808 - -
Vian11g01022 910 MobiDBLite consensus disorder prediction 20 69 - -
Vian11g01022 910 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 571 910 - -
Vian11g01022 910 MobiDBLite consensus disorder prediction 20 42 - -
Vian11g01022 910 Coils Coil 361 381 - -
Vian11g01022 910 Pfam WD domain, G-beta repeat 598 627 IPR001680 GO:0005515
Vian11g01022 910 Pfam WD domain, G-beta repeat 684 721 IPR001680 GO:0005515
Vian11g01022 910 Pfam WD domain, G-beta repeat 770 805 IPR001680 GO:0005515
Vian11g01022 910 Gene3D Transferase(Phosphotransferase) domain 1 106 376 - -
Vian11g01022 910 SUPERFAMILY Protein kinase-like (PK-like) 98 366 IPR011009 -
Vian11g01022 910 SUPERFAMILY WD40 repeat-like 598 907 IPR036322 GO:0005515
Vian11g01022 910 Gene3D - 574 910 IPR015943 GO:0005515
Vian11g01022 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 688 730 IPR001680 GO:0005515
Vian11g01022 910 PRINTS G protein beta WD-40 repeat signature 665 679 IPR020472 -
Vian11g01022 910 PRINTS G protein beta WD-40 repeat signature 792 806 IPR020472 -
Vian11g01022 910 PRINTS G protein beta WD-40 repeat signature 708 722 IPR020472 -
Vian11g01022 910 SMART serkin_6 13 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01022 910 ProSitePatterns Trp-Asp (WD) repeats signature. 792 806 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01022 Vian-Chr11 13711451 13715795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01022 678 852 Miscellaneous Gene Families AT5G08390 24.294 2.93e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Vian11g01022 WD40 0.0001 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01022 K26557 - gmx:100811457 1692.55