Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00982 ATGGGAGTTCCAGAGAAAGATCCTCTTGCCCAGTTGAGTCTACCACCTGGTTTTCGGTTCTACCCCACCGACGAGGAGCTTCTCGTTCAGTATCTCTGCCGCAAGGTCGCCGGCCACCATTTCTCTCTCCCAATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTCCCAAGCAAGGCGATTTTCGGGGAGAAAGAGTGGTACTTTTTCAGCCCTCGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGGGTCGGGGTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAGGGTAGAAAAGTTGGCATAAAAAAAGCTCTGGTCTTTTACGTTGGCAAAGCTCCTAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTTGACTCTTCCCGAAAGACCACCGGAACCAAGCTGGACGATTGGGTTCTGTGTCGTATATACAAGAAGAACTCGAGTGCACAGAAGGCGGCGCAGAACGGCGTCGTTTCGAGCAGGGAACACACTCAATACAGCAACGGTTCGTCGTCGTCGTCTTCGTCCCATCTGGACGACGTTCTGGAATCGCTGCCGACGATCGACGAACGATGTTTCGCGATGCCACGTGTCAGTACGATGCAGGCACAGCAGGAGGAGAAGGTGAGCGTTCATCAGAACCTGGGTGCGGGAGGGTTGGTGGATTGGGCCAACCCTGCGGTTCTGAATTCGGTGGGTGATTTCGTTTCGGGGAATAATCAAGTGGTGCAGGAGCACACGCAGGGGATGGTGAACTACGGCGGGTGCAATGACCTTTATGTCCCCACCTTCTGCCACGTGGAGTCTACGCTTCCGCAAAAGATGGAGGAAGAGGTGCAAAGCGGCGTGAGAAGCCAAAACAACAATAACCCGTGGTTTCTTCAGAACGATTATACGCAGGGGTATCAGAACCCGGTGGACACGTGTGGGTTTAAGTTCCCGGTTCAGCCGGTGGGATTCGGGTTCAGGCAATGA 1026 0.5341 MGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKTTGTKLDDWVLCRIYKKNSSAQKAAQNGVVSSREHTQYSNGSSSSSSSHLDDVLESLPTIDERCFAMPRVSTMQAQQEEKVSVHQNLGAGGLVDWANPAVLNSVGDFVSGNNQVVQEHTQGMVNYGGCNDLYVPTFCHVESTLPQKMEEEVQSGVRSQNNNNPWFLQNDYTQGYQNPVDTCGFKFPVQPVGFGFRQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00982 341 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vian11g00982 341 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Vian11g00982 341 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Vian11g00982 341 FunFam NAC domain-containing protein 72-like 23 167 - -
Vian11g00982 341 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 221 - -
Vian11g00982 341 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Vian11g00982 341 MobiDBLite consensus disorder prediction 168 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00982 Vian-Chr11 12613950 12615231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00982 1 276 NAC Transcription Factor Family AT3G15500 62.069 3.30e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian11g00982 NAM 6.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00982 - - gmx:100170718 620.542