LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian11g00981	ATGGAGAGCACCGACTCCTCCACCGGGTCACAACAGCAGCCGCAATTGCCACCTGGCTTCCGCTTCCACCCCACCGACGAGGAGCTCGTCGTTCACTACCTCAAGAAAAAAGCAGCTTCCGTTCCTCTTCCCGTCGCCATAATCGCTGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGCTAAGGCCACGTTTGGGGAGCAGGAGTGGTACTTCTTTAGTCCGAGGGACAGGAAGTATCCGAACGGTGCGAGGCCAAACAGAGCGGCCACTTCTGGGTATTGGAAGGCCACTGGGACTGATAAGCCTGTGTTAACCTCTGGGGGAACCCAGAAGGTTGGAGTGAAAAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGAATCAAAACTAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTGGCTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCACAGGTCTCCCATGGAGCATGACAGGGAAGATTCAATGGAAGACATGATTGGAGGGATTCCTCCTTCGATCAACGTGGGTCACATGAGTGGGAGGTATCATCACCATCATCATCATCTTTCAAAGATGTCCACAGGCTACAGCAGTGCATTGTTGGAAAATGACCAGAACCTGTTGGAAGGGATGATGATAGGTAACGGATCAGTGATGAACACAAGTACGACTGGTACTACACCTGGTGCCATGGGGGCCTCAAACTCCAAGGCAGAGCTTTCTTTTGTGCCAACCATGACTCACTCTTCCAACACTTGTAAAAGAACACTCTCGTCGCTGTATTGGAATGATGAGGATTTGGCTGGCACCTCATCATCCAACAAGAGGTTGAATTTGGAAAGTGGGGACAACAATCACGGAAGTGTTGTGAGAACTGATCAAGATAATGGCACTGCCACCTCAATTGTCACTCTGCTTAACCAGCTCCCTCAAACCCCTTCATTGCACCAGCAATCTATGTTGGGATCCATAGGCGATGGTCTTCTTAGGACAACATATCAAATACCAGGAATGAATTGGTATGCTTAG	1122	0.4938	MESTDSSTGSQQQPQLPPGFRFHPTDEELVVHYLKKKAASVPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPMEHDREDSMEDMIGGIPPSINVGHMSGRYHHHHHHLSKMSTGYSSALLENDQNLLEGMMIGNGSVMNTSTTGTTPGAMGASNSKAELSFVPTMTHSSNTCKRTLSSLYWNDEDLAGTSSSNKRLNLESGDNNHGSVVRTDQDNGTATSIVTLLNQLPQTPSLHQQSMLGSIGDGLLRTTYQIPGMNWYA	373

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vian11g00981	373	ProSiteProfiles	NAC domain profile.	16	177	IPR003441	GO:0003677\|GO:0006355
Vian11g00981	373	MobiDBLite	consensus disorder prediction	1	21	-	-
Vian11g00981	373	FunFam	NAC transcription factor 56	25	182	-	-
Vian11g00981	373	SUPERFAMILY	NAC domain	10	177	IPR036093	GO:0003677\|GO:0006355
Vian11g00981	373	PANTHER	NAC TRANSCRIPTION FACTOR 56	16	224	-	-
Vian11g00981	373	MobiDBLite	consensus disorder prediction	302	326	-	-
Vian11g00981	373	Pfam	No apical meristem (NAM) protein	17	143	IPR003441	GO:0003677\|GO:0006355
Vian11g00981	373	MobiDBLite	consensus disorder prediction	1	18	-	-
Vian11g00981	373	Gene3D	NAC domain	25	182	IPR036093	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian11g00981	Vian-Chr11	12563367	12564997	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian11g00981	1	373	NAC Transcription Factor Family	AT3G15510	54.124	2.48e-129	374

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Vian11g00981		NAM	2.3e-39	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian11g00981	-		-	vra:106763825	759.599

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