Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00956 ATGACCAAGTCCTCTACTGAAAAAAATGGACTCAAGAAGGGTCCATGGACCCCAGAGGAAGATCAGAAACTCATCGACTACATTCAAAAACATGGACATGGAAAATGGCGAACCCTTCCCAAAAATGCAGTTAGAGAATGGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACCCACATCAAGAAAAAGCTTTTCAAGATGGGGATTGATCCTGTGACTCACGCACCACGCCTTGATGTTCTACAACTTGCCTCCATTCTCAACACATCTTTGTTCAATTCATCACCACAATTCAACTACCCTTTTCTTTCAGGAAGATCAGTGATAAACTCCAGCCAGCTGCTAAGTTTGCTTTCCACTCTTCTCTCGTGTCAAAGCAGAAACAACCCTGATAATGTATTGAATCATAATAATTTCCACCAAAACGATAACCAACTCTTGCAAAATCAGCCCCAATGTACCCAAATGCAACTTGCTGATACCTTACAAACCTTCCAACCAAACCAACCCCAGGTTTCACTTCAAGAAAACCTTATTGCTAAGTCTAATAATCCATTGAACGTGGATCACCAACTGATGAAAAGTAAATTAGAGAATCAAATCTCTCCAGTTGCTACCTCTTTCACCCACCAAAACACCCTTCCAAATCTGTGGCATTATGACAACATATCAGACTTACAAATTGCCCAATCATCATCAGCTATGCAGTGTTTCTCTTCACCCAAGTTCAACTCTATATTCAACAGTCTCTTGGAAAATCAGAATCTGTGTAACAACGAGGGAATGCCAAATTTCAATTTAAGTTCACTGTTATCGTCAACAACTTCATCTTCCAGCCCAAGTACTTTGAATTCATCATCTTCCACCACATTTGTCAACGGAACCACAGAAGATGAAAGGGACACTTACGGCAGCAGCAACATGCTAATGTACAACATTTCCAATGGCTTGAATGACTCTGGACTTTTGTGA 1005 0.405 MTKSSTEKNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAVREWWSTIAANLPGRTDNEIKNYWNTHIKKKLFKMGIDPVTHAPRLDVLQLASILNTSLFNSSPQFNYPFLSGRSVINSSQLLSLLSTLLSCQSRNNPDNVLNHNNFHQNDNQLLQNQPQCTQMQLADTLQTFQPNQPQVSLQENLIAKSNNPLNVDHQLMKSKLENQISPVATSFTHQNTLPNLWHYDNISDLQIAQSSSAMQCFSSPKFNSIFNSLLENQNLCNNEGMPNFNLSSLLSSTTSSSSPSTLNSSSSTTFVNGTTEDERDTYGSSNMLMYNISNGLNDSGLL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00956 334 Pfam Myb-like DNA-binding domain 13 70 IPR001005 -
Vian11g00956 334 ProSiteProfiles Myb-like domain profile. 8 71 IPR001005 -
Vian11g00956 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 75 IPR017930 -
Vian11g00956 334 SMART sant 12 73 IPR001005 -
Vian11g00956 334 MobiDBLite consensus disorder prediction 287 314 - -
Vian11g00956 334 SUPERFAMILY Homeodomain-like 8 81 IPR009057 -
Vian11g00956 334 CDD SANT 15 71 IPR001005 -
Vian11g00956 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 48 241 - -
Vian11g00956 334 Gene3D - 10 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00956 Vian-Chr11 11953682 11955372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00956 7 106 MYB Transcription Factor Family AT4G21440 56.429 1.22e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian11g00956 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00956 K09422 - gmx:100820398 465.307