Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00955 ATGGGTTTCGATACCGAGTTCTCCATGCTTTCTAAAAGAGATCTGGAAACCATAAGTGATTACTTCAAAATCGAGCACGAATTCATGGCTCCTAGGTCGTTTTACTCATTATCATCCAACGCTCGGCATCGGATGCACGCGGTTTCGATGATAGCTAAGGTCGCTACCACTGAACCCATGGATACGTACATTCCATATGTTGCAGTGAATTACTTCGATCGCTTTATTTCAACGAATTCTCTTACAGAATTACAAGGGTCTTCTTTACTTGATAAAGTTCGTTTGTTAGCAATATGTTGCTACACACTTTCCGCCAAGATGAGGACAAAGCATTTCCCGCAAAAGCAATTTCTGACGAGAAAAGAAGCTGTTTACAAAACCGAAGTCGTAATGAGAATAGAATTTCGCATTCTCAGCGGACTTGACTGGCGAATGCGATCTATAACTCCCTTTCACTTCCTGGACTACTATTATCCCACCTTCAAAAGAATCGGTGGTTTTAAACGCCAATCCATTAATGAGATCATAGTCCAGTCTCAAGGAGAGGTCTACTTCGCTCAATTCAAACCTTCTGAAATTGCAATGTCCGCTTTACTGGCTGCTACTTACCTTGGATATTCCTCAAAATTTACCTTAATTGAGGGATCAATTCGCCTTTCGGATGATCTTATGGCCTGTTATCAAGAGATGGTTCAGCTTTGTCGTCATAGGAAAATCAACATAAGTAAAAGTTCTGGAGAAGTTATCTTTCCTATTCCCTCCTCATCGACAACGGAATCAGAAGAAGGATTAGGAAAAGCAGCTGAATTACGAGTACGAAAACAAAGAAGGAGCTCGCGGATCCAGATTTTGAACACGGTGTTGGAAAATGATGATGAAGAAGAAGAAGATGTAGCACTGTTAAACCGCCGAAATCGGAATAGCAACGAGGAAGCGGGGGAGGCATCTAAAGAAGTTGAAGAAGGTAAGAGCGAGGCTGAGAAACTACGAGAGGTGATGGAAAGTGCAGCGAGAGTAGCATCTGGGACCGGAGCAAGACAGGAGAAGGGCGAAGGGAAATCTGAAGAAATGGTAGAAGCTGAGAGCGGAACAAGAGATGACGAGTCCAAGGGGCCCTGTGAAGAAATAGTAGGAGCTGAGAGCAGCAGAGCAAGAGAGGACAAGGGCAAGGGCAAGGCTGTAGAAGAAGCAAGCGAGAATGAGCTGCGAAAAAGACAGATAAAGGGCAAGGGCAAGGCTGTAGATGAAATGTGTGAAACAATATTGAGATCAGAGACAGGTGTAGAGGGTGCACCATTGAGGGCAATGAACTTTCAGGTGCAGTGGCCTGTTATTGTGCGGCCAGGTGAGAGAGTTGACAATATAGAGGCTAGCTTATATGTAGATGAATCCCGCATGACAACTACTCGATGTCCTAGAACAATAAGAGGGAGCGACATCGTTCCACCTCCACTTTCCCACCGTTGTCAGTGCAAAATCATGTAG 1485 0.4431 MGFDTEFSMLSKRDLETISDYFKIEHEFMAPRSFYSLSSNARHRMHAVSMIAKVATTEPMDTYIPYVAVNYFDRFISTNSLTELQGSSLLDKVRLLAICCYTLSAKMRTKHFPQKQFLTRKEAVYKTEVVMRIEFRILSGLDWRMRSITPFHFLDYYYPTFKRIGGFKRQSINEIIVQSQGEVYFAQFKPSEIAMSALLAATYLGYSSKFTLIEGSIRLSDDLMACYQEMVQLCRHRKINISKSSGEVIFPIPSSSTTESEEGLGKAAELRVRKQRRSSRIQILNTVLENDDEEEEDVALLNRRNRNSNEEAGEASKEVEEGKSEAEKLREVMESAARVASGTGARQEKGEGKSEEMVEAESGTRDDESKGPCEEIVGAESSRAREDKGKGKAVEEASENELRKRQIKGKGKAVDEMCETILRSETGVEGAPLRAMNFQVQWPVIVRPGERVDNIEASLYVDESRMTTTRCPRTIRGSDIVPPPLSHRCQCKIM 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00955 494 Coils Coil 291 339 - -
Vian11g00955 494 MobiDBLite consensus disorder prediction 348 404 - -
Vian11g00955 494 MobiDBLite consensus disorder prediction 297 334 - -
Vian11g00955 494 SUPERFAMILY Cyclin-like 128 238 IPR036915 -
Vian11g00955 494 Gene3D - 31 146 - -
Vian11g00955 494 PANTHER CYCLINS 17 238 IPR039361 -
Vian11g00955 494 MobiDBLite consensus disorder prediction 292 404 - -
Vian11g00955 494 Pfam Cyclin, N-terminal domain 25 145 IPR006671 -
Vian11g00955 494 Pfam Cyclin, C-terminal domain 149 239 IPR004367 -
Vian11g00955 494 Gene3D - 24 214 - -
Vian11g00955 494 CDD CYCLIN_AtCycD-like_rpt2 148 230 - -
Vian11g00955 494 SMART Cyclin_C_2 148 273 IPR004367 -
Vian11g00955 494 SUPERFAMILY Cyclin-like 14 145 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00955 Vian-Chr11 11945840 11948470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00955 21 199 Core Cell Cycle Gene Families AT1G70210 32.065 1.75e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00955 - K18812 var:108332810 890.952