Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00944 ATGGCAGATGATCAATTTCAGGCAAGTGGAAACTGGTGGGACACAGCAAGGAACGTCAGGTATGAAAGCGGGGCGTCACAGTCATCTTCCTCTGCCATCACCAACATAGCAAACTATGCTTGGCAAGCTTCAGATATGGCAGACATGAAGCCAAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTTCATGACTCACAGAATAAGCTTCAACCCCCAGATTCTACAACTTCCACTGACCCCAACTTGCATATGATGGGTCTAGGCCTCTCATCCCAAGCCATGGATTGGAATCAAGCATCTTTGTTACGAGGAGAGAAGGGTACGGAGAATAGTTTCAGATCGATGTTGCAAGAGAACTTGAGCTCATCAAGAACAAATTTTCAGCAAGAAACTGGGGTGGAGTTGTCTCAACAAGTTCAATGGAGGTCAGAGAAGATGTTCTCTACAGAATCTTCAACGAATGAGTTCAAGCAAGTGAATAGGGGTTTCTCCTTGGATCAAAGCAAGTTTAGTCCACAATATAGTTCTGGGGACAGCACAGTGACAAGCCAAGGGTTACCCTCTTCTAACTTTCAGATGGATTCCTCAGCCTTATATGGGACCCCTTCAATATTGCAAGGACTATTGGGACCTGATCACAATAACCAACAACCTTCTTCCTTTGAGAACCGCTCCATGAGTTTTCCATACCCAACAACCTATGGATTAAACTCTAACAATGAACTCATCCCTTCCTGGTCCAAAGTTCCTCAATTTTTGAGAGGTTCACCTCCAAAACAACCACCCAATAACCAGTTGCATTTCACTAACAACGCACCCTTTTGGAACGCTTCTGAGGCTGCAAACTTCAAAGATGTTCGGTCCAGCTTCTTCCCTTCATTGCAACCCCCCTTCTCTACGCCAAATTTCGAAGTACAGTCTAAGAATATATCTGAAGTTAGGGAGTCTGGTACTGTGGGAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTATGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACTGCCTTAAGTACACCGTATATGAAAACTGGAGCTCCAATACAGATTCAACAGAATTCTGGTAAATGTAAGGAAACTGAGGGTCCAAAGCAGGATCTAAGAAGCCGAGGGCTATGCTTGGTGCCTGTTTCAAGCACATTCCCAGTAACTCATGAAACAACAGTGGATTTTTGGACACCAACATTCGGAGGAGTTTCCAGATAG 1365 0.4491 MADDQFQASGNWWDTARNVRYESGASQSSSSAITNIANYAWQASDMADMKPRSSMDSSSVVFHDSQNKLQPPDSTTSTDPNLHMMGLGLSSQAMDWNQASLLRGEKGTENSFRSMLQENLSSSRTNFQQETGVELSQQVQWRSEKMFSTESSTNEFKQVNRGFSLDQSKFSPQYSSGDSTVTSQGLPSSNFQMDSSALYGTPSILQGLLGPDHNNQQPSSFENRSMSFPYPTTYGLNSNNELIPSWSKVPQFLRGSPPKQPPNNQLHFTNNAPFWNASEAANFKDVRSSFFPSLQPPFSTPNFEVQSKNISEVRESGTVGKKSGNEPAPKRTRNETPSPMPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKTGAPIQIQQNSGKCKETEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGVSR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00944 454 Gene3D - 344 404 IPR036638 GO:0046983
Vian11g00944 454 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 123 435 - -
Vian11g00944 454 MobiDBLite consensus disorder prediction 51 82 - -
Vian11g00944 454 CDD bHLH_AtbHLH_like 340 391 IPR045239 -
Vian11g00944 454 MobiDBLite consensus disorder prediction 169 188 - -
Vian11g00944 454 MobiDBLite consensus disorder prediction 313 341 - -
Vian11g00944 454 SMART finulus 345 389 IPR011598 GO:0046983
Vian11g00944 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 401 IPR036638 GO:0046983
Vian11g00944 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Vian11g00944 454 FunFam Transcription factor bHLH123 family 344 406 - -
Vian11g00944 454 MobiDBLite consensus disorder prediction 49 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00944 Vian-Chr11 11580987 11584054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00944 103 454 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.194 1.42e-79 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00944 - - gmx:100778697 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00944 11 11580987 11584054 Vian11g00944 11 11580987 11584054 ECH