Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00942 ATGGGAACAAAGGCAAAGAAAGCTATGAAGAAGAACATGAAAATGGCTTCCTCTAAACAGCCATCCCAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGCCAGATCGCCGAACAGAAGCCGCTGGAGAATACTTCCACGGTATTGCACGTGTCCAGGATTCCGCATGGATTCTATGAGAAAGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAGTCGCGAGAAATAAAAAGACAGGAAAATCAAGACATTTTGGGTACATAGAATTTGAATCTCCTGAGGTAGCGAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTTGAGCACCTTCTCCAAGTTCATGTTGTACCTCCAGAGCATGTTCATTCAAGATTATGGAGAGGATTCAGTTATCGTCACAAGCCATTGGATTATGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACCTTAGAAGAGCACAAAAAATTGGTGGAGAGGATTCTAAAACATGACCAAAAACGACGGAAAAGGATAGAGGCTGCTGGCATTGATTTCGAATGCCCTGAGATCATGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGATGACTGA 630 0.4286 MGTKAKKAMKKNMKMASSKQPSQGADFLPLEGGPARQIAEQKPLENTSTVLHVSRIPHGFYEKEMEGYFGQFGTIKRLRVARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVHVVPPEHVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLEEHKKLVERILKHDQKRRKRIEAAGIDFECPEIMGNIQPAPKKIKFDD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00942 209 CDD RRM_NIFK_like 50 123 - -
Vian11g00942 209 MobiDBLite consensus disorder prediction 1 26 - -
Vian11g00942 209 SUPERFAMILY RNA-binding domain, RBD 31 137 IPR035979 GO:0003676
Vian11g00942 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Vian11g00942 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 208 - -
Vian11g00942 209 Gene3D - 3 124 IPR012677 -
Vian11g00942 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 118 IPR000504 GO:0003723
Vian11g00942 209 Coils Coil 147 170 - -
Vian11g00942 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00942 Vian-Chr11 11476092 11478734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00942 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 32.432 8.26e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00942 K14838 - gmx:100778780 358.221