Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00887 ATGCTGAAAACTAAATCAGGGCTTCAACGGTTTTGGGACCGTTTCGGTACTCGATCATCGGGATCCACTTCTTCTTCATACGACTCCTCGGACACCATCCAAAACCAACACTACAGATACGATGTGTTTATCAGTTTCAGAGGTCCTGACGCCCGCAACTCTTTTGTTGATCATCTCTGCTCTCATCTCCTCCGAAAGGGCATTTTCGTCTTCAAAGATGACCACAATCTACAGAAAGGAGAATCCATTTCCCCACAGCTTCTACAAGCAATTCAACTTTCACGCCTTTCTATCATTGTCTTTTCCAAAAATTATGCTTCTTCCACCTGGTGTTTAGACGAAATGACCGCCATAGCTTCTTGCAAACAACAATCAAGCCAAATTGTTTTCCCCATTTTCTATGATGTAGATCCATCTCATGTAAGACATCAGAATGGGGTATACAAGAATAACTTCCTTTCACACAGATGGAAATTTGGAAAAGATCGGGACAAAGTTCTTGGATGGAAGAGGGCTATGACGGATTTGGCCAATTCAGCTGGTTGGGATATGAGGGACAAGCCAGAGTTTGCACAGATTCAAAGCATTGTTCAAGCAGTAATTAAAAAATTAGGTCATAAGTTTTCAAGGTCTGTGAATGACCTTATTGGGATACAACCACGCGTACAAGCATTAGAAGACAAATTAAGATTAAGCTCAAAAAGTGATGATGTTCGAGTTTTAGGAATTTGGGGAATGAATGGAATAGGAAAGACTACTCATGCAGCTGTCCTATATGACAAAATCTCTCATATGTTTGATGCTTCTTGTTTCATTGAGGATGTGAACAAACTTTATAGGGATGGTGGCCATACTGCTGTTCAAAAGCAAATTATTCATCAAACTTTTCGTGAAAACATAGATATGAGTAATCCTATTGAAATATCAGGGATTGTAGAAAATAGGCTACACAGCATAAAGGTCCTCATAGTTCTGGACAATGTTGATGAATTAGAGCAATTGGAAAATTTGGCCATAAAACCTAGATTGCTTTTGAAGGGAAGTAGGATGGTTATTACAACGACAGATGAGCATATTCTGAAAGTGTATGAGGGTGATGTGTTGAGACACAAGCTTCCATTATTGAACGATGCGGATGCTCGTGAATTATTCTGTAGAAACGCTTTCAAATGTGAAGATCAAAGCAGTAATTGTGCGGCGTTGATTCCTGAAGTACTCAAATATGCCCAATGCCTTCCACTGGCAATTAAAGTGTTGGGTTCTTTCTTGTGTACTCGAGATGCTGATGACTGGAGAGATGTGTTGAATAGATTGGAGAATAGTCCAGATGACAGAATTATGAATGTACTTCAACTAAGTGTTGATGGACTACAACGTGAGGAAAAACAAATATTTTTACACATTGCTTGTTTCTTTAAAGGGGAGAGGGTGGATTATGTTAAGCGAATTCTAAAATGTTGTGGGTTACACCCTGACATTGGAATTTCAAGACTTACTGAGAAATCACTCATCACTATTAGCGATGAAGAAATTCATATGCATGAATTGTTACAAGAATTAGGAAAGAAAATGGTTCGGGACCAATCTCCGGAGGAACCAGGATCATGGAGTAGAATATGGCTTCATAAAGACTTCTTGCATGCCTTGACAGCAGAAACGGGAACAGAGAAGGTGAAAGCCATAGTTTTAAATAAAAAAGAAGAAATGTCAGAATGTATTGTTGACGGATTGTCAAGAATGAAGGAACTTACATTACTGATATTATATCACACAAGAGTTTCAGGAAGGCTGGAGGTTCTTTCAGACAGACTACAATATCTATTGTGGCATGATTATCCTTTTGCTTCTCTGCCTCCATACTTTACAGCCTTTAATCTTGTGGAATTGAATATGCCTAACAGTCACATCACACATTTATGGGAAGGCGGCAAGAGCTGTCCCAACTTGAAAAGGATTGATTTAAGCAACTCCAAGTACCTGAGTGAGACTCCAGATTTTTCCAGAATCATAAAACTTGAAAGGCTAGATCTTTCTGGATGTTCAAGTTTATCTTATGTCCATTCATCAATTGGACTTCTTAAGAAACTTGCTTTCTTGAATTTACGAAATTGTTGCAATCTAGTTTGCATTGACTTTGGCTGTGTATGGAATATGAGTTCTCTGAGAGTTCTACATCTCTCGGGTTGTTCTAAACTGGAAAGCACCCCAGATTTTACAAGGGCAACACATCTTGAGTACCTTGACATGGATGAATGTACAAGTTTATCCACTATTCATGAGTCTATTGGAGTCCTTTCAAGTCTTACTTTCTTGAGTTTGAGAGGTTGCATAAAGCTTGTCAGTATACCAAATGATATCAATTCCTTGGTATCTCTTCAAACTCTAGATTTATCCTGTTGTTATAACGGATGGAATCCGATACCAAGACAAGCTCTTTCGTCCCATTTTAAATCCTTGATTTTTCTGGACATAAGTAATTCCTATCTAGAAGAAGTACCTGATGCTATTGGAGACTTAAGATGTTTAGAAAGACTGAATCTACAGGGAAACAGATTATTTTCAATACCTGATTCCTTCCGTCAGCTTCATTGTCTAGCATATTTAAACTTGTCTCATTGTCGTTACCTTAAAAATTTGTCAGGCCTTCCAACTGAAGGAGATAAATCAGGGGGGAAGTATTTTAAAACGGTATCTGGATCTCGTGATCATAGATCAGGATTTTATCTTTTTAATTGTCCCGATGTGTCTCATGATAGACTTGAGTTCGCCGGACTTGAACGCTTCTTCCACCTAATTAAGGAACCCTGTAATTTTCGGTGTGGCTTTGACCTTATTCTTCCTTGGGATATGGGATTTCGACCTGTCTTCGGTGACACATTCTTAGGGAATTCAATTATAAGGATACTTCAATGTGTTATGAATGACAACTGGATTGGCTTTGGCTTTTATGTTATATTTAGTCGTGGGATTGATTTTTCTTCTTCTCACTGTTCATTATCCCATCTACTTTATCTTTCTTTTGAAAGTGAATACACAGAAGAGTACTTTGATATGCGATTTAATTCGGAGAGAGATGAATACTTTAGGTCTAGGCATATTTGGATAATTTACATGAGTCGAGAACACTGTCATTTTGTGAAAACAGGGGCGCATATCACATTTAAAGCGCAACCAAATGTTAAGATCGATGCATTGGGATTGAGACCTATACTCAAACAAGATATAAGTGACAGTAAAGGGAAGAAATACATAAAATTTTCCAAATTAAATCATGATCATTTGGACTTTGAGTATGTAGAAAAAAGCAACAGTGGTTCAGGGCCGAAAATCCAGCTTCCTTACAATTGGTATGTCACAGAAGAAGAGCAAGTTGAGAATATTGATGCAAAGGCCAAAGAAAATAATCTCTCCAATGCAGGGCTTTAA 3426 0.3809 MLKTKSGLQRFWDRFGTRSSGSTSSSYDSSDTIQNQHYRYDVFISFRGPDARNSFVDHLCSHLLRKGIFVFKDDHNLQKGESISPQLLQAIQLSRLSIIVFSKNYASSTWCLDEMTAIASCKQQSSQIVFPIFYDVDPSHVRHQNGVYKNNFLSHRWKFGKDRDKVLGWKRAMTDLANSAGWDMRDKPEFAQIQSIVQAVIKKLGHKFSRSVNDLIGIQPRVQALEDKLRLSSKSDDVRVLGIWGMNGIGKTTHAAVLYDKISHMFDASCFIEDVNKLYRDGGHTAVQKQIIHQTFRENIDMSNPIEISGIVENRLHSIKVLIVLDNVDELEQLENLAIKPRLLLKGSRMVITTTDEHILKVYEGDVLRHKLPLLNDADARELFCRNAFKCEDQSSNCAALIPEVLKYAQCLPLAIKVLGSFLCTRDADDWRDVLNRLENSPDDRIMNVLQLSVDGLQREEKQIFLHIACFFKGERVDYVKRILKCCGLHPDIGISRLTEKSLITISDEEIHMHELLQELGKKMVRDQSPEEPGSWSRIWLHKDFLHALTAETGTEKVKAIVLNKKEEMSECIVDGLSRMKELTLLILYHTRVSGRLEVLSDRLQYLLWHDYPFASLPPYFTAFNLVELNMPNSHITHLWEGGKSCPNLKRIDLSNSKYLSETPDFSRIIKLERLDLSGCSSLSYVHSSIGLLKKLAFLNLRNCCNLVCIDFGCVWNMSSLRVLHLSGCSKLESTPDFTRATHLEYLDMDECTSLSTIHESIGVLSSLTFLSLRGCIKLVSIPNDINSLVSLQTLDLSCCYNGWNPIPRQALSSHFKSLIFLDISNSYLEEVPDAIGDLRCLERLNLQGNRLFSIPDSFRQLHCLAYLNLSHCRYLKNLSGLPTEGDKSGGKYFKTVSGSRDHRSGFYLFNCPDVSHDRLEFAGLERFFHLIKEPCNFRCGFDLILPWDMGFRPVFGDTFLGNSIIRILQCVMNDNWIGFGFYVIFSRGIDFSSSHCSLSHLLYLSFESEYTEEYFDMRFNSERDEYFRSRHIWIIYMSREHCHFVKTGAHITFKAQPNVKIDALGLRPILKQDISDSKGKKYIKFSKLNHDHLDFEYVEKSNSGSGPKIQLPYNWYVTEEEQVENIDAKAKENNLSNAGL 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00887 1141 Pfam Leucine Rich Repeat 625 642 IPR011713 -
Vian11g00887 1141 SUPERFAMILY L domain-like 527 881 - -
Vian11g00887 1141 FunFam Disease resistance protein (TIR-NBS-LRR class) 36 206 - -
Vian11g00887 1141 Gene3D Ribonuclease Inhibitor 715 805 IPR032675 -
Vian11g00887 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 468 IPR027417 -
Vian11g00887 1141 Gene3D - 374 458 IPR042197 -
Vian11g00887 1141 PRINTS Disease resistance protein signature 315 329 - -
Vian11g00887 1141 PRINTS Disease resistance protein signature 409 423 - -
Vian11g00887 1141 PRINTS Disease resistance protein signature 716 732 - -
Vian11g00887 1141 PRINTS Disease resistance protein signature 240 255 - -
Vian11g00887 1141 Gene3D Ribonuclease Inhibitor 806 1014 IPR032675 -
Vian11g00887 1141 Pfam TIR domain 40 210 IPR000157 GO:0007165
Vian11g00887 1141 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40 733 IPR044974 GO:0006952
Vian11g00887 1141 ProSiteProfiles Leucine-rich repeat profile. 841 862 IPR001611 GO:0005515
Vian11g00887 1141 Gene3D - 205 367 IPR027417 -
Vian11g00887 1141 SUPERFAMILY Toll/Interleukin receptor TIR domain 30 182 IPR035897 -
Vian11g00887 1141 Pfam Leucine rich repeat 822 874 IPR001611 GO:0005515
Vian11g00887 1141 SMART till_3 39 179 IPR000157 GO:0007165
Vian11g00887 1141 Gene3D Ribonuclease Inhibitor 494 714 IPR032675 -
Vian11g00887 1141 ProSiteProfiles TIR domain profile. 38 204 IPR000157 GO:0007165
Vian11g00887 1141 Pfam NB-ARC domain 224 444 IPR002182 GO:0043531
Vian11g00887 1141 Gene3D - 33 204 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00887 Vian-Chr11 10156635 10163598 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00887 714 871 WRKY Transcription Factor Family AT4G12020 37.017 1.35e-14 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00887 - - vra:106778496 1882.07