Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00885 ATGGCCACTATAGCTGATTGCAAACAACAATCTAACCAAACTGTTTTCCCTGTTTTCTATGATGTTTATCCATCTCACGTTAGACATCAGATTGGACCGTATGAGAATGCTTTTGTTTTACACCGATCGAAATTTAAAGAAGAGCCAAACAAGGTCCTTCGATGGGAGAAAGCTATGACGGATTTGGCCAATTCAACTGGTTGGGATGTCAGAAACAAGACAGAATTCGGGGAAATTGATAAGATTGTTGAAGCGGTAATAGAAACACTGAGTCATAAATTCTCTGGGTTTGTTAATGATCTTATTGGGATACAACCTCGCGTACAAGCATTGGAAGATAAATTAAGGTTAAATTCAAAACCTGATGATGTTCAAGTTTTAGGAATTTGGGGAATGGGTGGAATAGGAAAGACGACTCATGCAGCTGTGTTATATGACAAAATGTCTCATAGGTTTGATGGTTCTTGTTTCATTGAGGATGTGAGCAAACTTTATAGAGATGGTGGCCATACTGCTGTTCAAAAGCAAATTATTCAACAAACTTTGAAGGAAAAAAGTCTAGATACATGCAGTCCTAGTGAAGTATCAGGGATTGTAAGAAATCGGCTTCGTAAGAAAAACATTCTTGTAGTTCTTGACAATGTTGATGAATTAGAGCAATTGGAGCATTTGGAAATAAATTCTAAATTGCTTTGCAAAGGAAGTAGAGTGATTATTATCAGCAGGGATGAGCATATTCTAAAAGTGTACGGAGCTGATGTAATACACAAAGTATCATTAATGAATGATAAAGATGCTCGTGAATTGTTTTATACAAAAGCTTTCAAAAGTGAAGAGCAAAACAGTAGTTGTGTGGAGTTGATTCCTGAGGTACTCAAATATGCCCAATGTCTTCCATTAGCAGTTAGAGTGGTAGGGTCTTTCTTGTGTGGAAGAAATTCTAGAGAATGGAGAGATACTTTGAATAGATTTGAGAATAATCCAGATAATAATAAAATCATGGATGTACTTCAAATAAGTTTTGATGGGCTACACTGTACGGAAAAAGAAATATATTTACACATTGCTTGTTTCTTTAACGAAGAGAGCGAGGATTATGTTAAGCGAATTCTGGAGTGTTGTAACTTACACCCTCACATTGGAATTCAAATAATGATTGAGAAATCGCTCATAACAATTAAAGATCAACAAATTCATATGCATGATATGTTGCAAGAATTGGGGAAGAAGATTGTTCGCAACCAATGTCCCGAAGAACCAGAATCATGGAGTAGAATATGGCTTTATAAAGATCTCTTTCATGTGTTGACGACCGAAACGGGAACAAATCGTGTTAAAGCCATAGTTCTAAATGAAAAGGAAGCTATTTCAGAATGTAGCGTTGATGGATTGTCAAAAATGAAGAACCTTAGATTACTCATATTATATCATAAAAGCTTTTCGGGAAGCCTTAATTTTCTTTCTCAGAAGCTGCAATATCTTTTGTGGCATGATTATCCTTTTTCTTCTTTGCCATCAAGTTTTGCAGCCTATGACCTTGTGGAATTGAACATGCCTAATAGTAGCATCAACTGCTTATGGGAAGGCCGCAAGCATTTCCCATGTCTGAAAAGAATGGATTTGAGTAACTCCAAATATCTTAGGGAGACTCCTGATTTTACTAAGGTCCCAAACCTTGAGCGTCTGGATCTTTCAGGATGCACAGATTTATCATTTGTCCACCCATCAATTGGGCTTCTTCAACAGCTTGCTTTCTTGAGTTTAAGAAATTGCAGCAATCTCATCAGCATCGAATTTGGCAATGGATTTAGTCTAAGTTCCTTGAGAGTTCTACATTTCTCTGGTTGCACTAAACTTGAAAACACCCCAGATTTTACATGGACAACAAATCTTGAGTACCTTGACTTCGATGGATGTACAAGTTTGTCCTCGGTTCATGAATCTATTGGAGTCCTTACAAAGCTTACATTCTTGAGTTTGAGAGACTGCACAAGCCTTGTTAGTATACCTAGCAACAATAATATCATGAAATCTCTCCAGACTCTAGATTTCTCTGGCTGTTTTCAACTTACTGATTTGTCCTTAGGGAAATCTTTCAGGATCTCTTTGATTCTTTTGGACATAAGCTTCTGCAATCTTCTTAAAGTACCTGATGCTATTGGAGACTTGTTGTGTTTAGAAAGACTGAATATGGAGGGAAACAATTTTTTTTTTATACCATCTTCCATTCACAAGCTTCGTAGTCTAACGTATTTAAACGTGTCCCATTGCCATTGGCTTCACCGTTTGCCTTACCTTTCAACAAGAATTTCTTCATCTACGGGAAGGTACTTCAAAACGGTATCTGGATCTCGTGATCATAGATCAGGCCTATATTTTTTCGATTGTCCCAAGATAGATTGGATGGATCGACCCAGTTACCAAGAATGGCTTTTAAGACTAGCTAAGAATCCATGTTCTTTTAGGTGTGGCTTTGACATTGTTGTTCCTTGGGGTTTGGAACTTCCAGGTTGGTTAAAACAGAGATTTAAAGGGGATTCGGTTATAAGGATAGTGGAATTTAATGAGGATGACGACTGGATTGGGTTTGTTTTCGGTGTTATATTTGAGCGAAAGAATGGTGCTGTGGTTGCGAGGTCTTCATCACATCCATTTTATCTGTCTTTTGAAAGTGAAGAGACAGAAGAATACTTCGACATGCAACTGAATTTGGAGCGGGACAAAGTGGATGGATCAAAGCATCTTTGGGTTATTTACATCTCTCGAAAACACTGTCATTTTGTGAAAACAGGAGCACATATCTCATTTAAAGCGCATCCAAGTCTTGAGATTAATGCATGGGGGATGAAGAGTATGTTCCGGAAAGATTCAATGTTCTTAGAACGCCATGTGAACTTTGATTTTGTAGAAAAAAGCAGCACCAATTCTGGTCCTAAATTCAAGCTTCCTTACAATTGGTTGGTCACAGATGAAGATGAAGTTGAGAATATTAAGGCAAAGGCAAAAGAAAATAATTTGTCTTATGCAGGCCTTTATTAA 3039 0.3735 MATIADCKQQSNQTVFPVFYDVYPSHVRHQIGPYENAFVLHRSKFKEEPNKVLRWEKAMTDLANSTGWDVRNKTEFGEIDKIVEAVIETLSHKFSGFVNDLIGIQPRVQALEDKLRLNSKPDDVQVLGIWGMGGIGKTTHAAVLYDKMSHRFDGSCFIEDVSKLYRDGGHTAVQKQIIQQTLKEKSLDTCSPSEVSGIVRNRLRKKNILVVLDNVDELEQLEHLEINSKLLCKGSRVIIISRDEHILKVYGADVIHKVSLMNDKDARELFYTKAFKSEEQNSSCVELIPEVLKYAQCLPLAVRVVGSFLCGRNSREWRDTLNRFENNPDNNKIMDVLQISFDGLHCTEKEIYLHIACFFNEESEDYVKRILECCNLHPHIGIQIMIEKSLITIKDQQIHMHDMLQELGKKIVRNQCPEEPESWSRIWLYKDLFHVLTTETGTNRVKAIVLNEKEAISECSVDGLSKMKNLRLLILYHKSFSGSLNFLSQKLQYLLWHDYPFSSLPSSFAAYDLVELNMPNSSINCLWEGRKHFPCLKRMDLSNSKYLRETPDFTKVPNLERLDLSGCTDLSFVHPSIGLLQQLAFLSLRNCSNLISIEFGNGFSLSSLRVLHFSGCTKLENTPDFTWTTNLEYLDFDGCTSLSSVHESIGVLTKLTFLSLRDCTSLVSIPSNNNIMKSLQTLDFSGCFQLTDLSLGKSFRISLILLDISFCNLLKVPDAIGDLLCLERLNMEGNNFFFIPSSIHKLRSLTYLNVSHCHWLHRLPYLSTRISSSTGRYFKTVSGSRDHRSGLYFFDCPKIDWMDRPSYQEWLLRLAKNPCSFRCGFDIVVPWGLELPGWLKQRFKGDSVIRIVEFNEDDDWIGFVFGVIFERKNGAVVARSSSHPFYLSFESEETEEYFDMQLNLERDKVDGSKHLWVIYISRKHCHFVKTGAHISFKAHPSLEINAWGMKSMFRKDSMFLERHVNFDFVEKSSTNSGPKFKLPYNWLVTDEDEVENIKAKAKENNLSYAGLY 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00885 1012 SUPERFAMILY L domain-like 456 764 - -
Vian11g00885 1012 Gene3D - 1 91 IPR035897 -
Vian11g00885 1012 Pfam Leucine Rich Repeat 512 529 IPR011713 -
Vian11g00885 1012 Gene3D Ribonuclease Inhibitor 434 599 IPR032675 -
Vian11g00885 1012 ProSiteProfiles TIR domain profile. 1 90 IPR000157 GO:0007165
Vian11g00885 1012 Pfam TIR domain 3 92 IPR000157 GO:0007165
Vian11g00885 1012 Gene3D - 260 345 IPR042197 -
Vian11g00885 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 355 IPR027417 -
Vian11g00885 1012 SUPERFAMILY "Winged helix" DNA-binding domain 331 436 IPR036390 -
Vian11g00885 1012 Pfam NB-ARC domain 108 342 IPR002182 GO:0043531
Vian11g00885 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 620 IPR044974 GO:0006952
Vian11g00885 1012 PRINTS Disease resistance protein signature 126 141 - -
Vian11g00885 1012 PRINTS Disease resistance protein signature 554 570 - -
Vian11g00885 1012 PRINTS Disease resistance protein signature 202 216 - -
Vian11g00885 1012 PRINTS Disease resistance protein signature 295 309 - -
Vian11g00885 1012 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 68 IPR035897 -
Vian11g00885 1012 Gene3D - 92 256 IPR027417 -
Vian11g00885 1012 Gene3D Ribonuclease Inhibitor 603 698 IPR032675 -
Vian11g00885 1012 Gene3D Ribonuclease Inhibitor 699 776 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00885 Vian-Chr11 10122663 10128000 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00885 604 814 WRKY Transcription Factor Family AT4G12020 31.604 1.41e-16 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00885 - - var:108332841 1826.22