Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00883 ATGCTTTTGAAGGGAAGTAGAATGGTTATTACCACCACAGATATGCATATTCTGAAAGTCTATGAGGGTGGCGTGATACACAAGGTTCCATTATTGAATGATAATGATGCTCGTGAATTGTTCTGTAGGAAAGCCTTCAAAAGTGAAGAGCAAAGCAGTAGTTGTGAGGCGTTGATTCCTGAGGTACTCAAGTATGCCCAATGTCTTCCATTGGCAATTAGAGTGTTGGGTTCTTTCTTGTGTACTCGAGATGCGGTTGAATGGAGAGATGTATTGAATAGATTGCAAAGTAGTCTCGATAAAAAAATTATGATTACATTTCAAATAAGTGTTGATGGACTAAACCATGAGGAGAAACAAATATTTTTACACATTGCATGTTTCTTTAAAGGGGAGAGGGTGGATTATGTTAAGCGAATTCTAGACTGTTGTGAGTTATACCCTCACATTGGAATTTCAAGACTCGTTGAGAAATCACTCATCACTATTAGCAATGAAGAAATTCATATGCATGAATTGTTGCAAGAATTGGGAAAGAAAATGGTTTGGGACCAATCTCCACAAGAACCAAGATTCTGGAGTAGAATATGGCTTCATAAAGACTTCTTGCAAGTCTTGACAGCAGAAACGGGAACAGAAAAGGTGAAAGCAATAGTTTTAAATAAAGAAGAAGAAATGTCGGAATGTAGTATTGGTGGATTGTCAAGAATGAAGGAGCTTACATTGCTTATATTATATCACACAAAAGTTTCAGGAAGCTTGGAGTTTCTTTCAGACAGACTGCGATATCTATTGTGGCATGATTATCCTTTTGATTCTCTGCCTCCATATTTTACGGTCTCTAATCTCGTGGAGTTGAATATGCCTAACAGTCACATCATAAGTTTATGGCACGGTAACAAGGAATAG 909 0.374 MLLKGSRMVITTTDMHILKVYEGGVIHKVPLLNDNDARELFCRKAFKSEEQSSSCEALIPEVLKYAQCLPLAIRVLGSFLCTRDAVEWRDVLNRLQSSLDKKIMITFQISVDGLNHEEKQIFLHIACFFKGERVDYVKRILDCCELYPHIGISRLVEKSLITISNEEIHMHELLQELGKKMVWDQSPQEPRFWSRIWLHKDFLQVLTAETGTEKVKAIVLNKEEEMSECSIGGLSRMKELTLLILYHTKVSGSLEFLSDRLRYLLWHDYPFDSLPPYFTVSNLVELNMPNSHIISLWHGNKE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00883 302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 125 IPR027417 -
Vian11g00883 302 Gene3D - 31 115 IPR042197 -
Vian11g00883 302 Pfam Leucine Rich Repeat 282 301 IPR011713 -
Vian11g00883 302 SUPERFAMILY "Winged helix" DNA-binding domain 102 206 IPR036390 -
Vian11g00883 302 Pfam NB-ARC domain 5 101 IPR002182 GO:0043531
Vian11g00883 302 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 296 IPR044974 GO:0006952
Vian11g00883 302 SUPERFAMILY L domain-like 234 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00883 Vian-Chr11 10015768 10025938 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00883 6 302 WRKY Transcription Factor Family AT5G45050 31.677 1.19e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00883 - - vum:124842545 597.045