Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00824 ATGCTACAAAAGATGGATGATGGAGAAATTTCAAATGCTTTCCCTCTTCAGAACCCATCAACTGCTGCATCTAACCAACCTCCTGTTTTGAAGAGGAAGAGAAACCTCCCTGGAAATCCAGATCCTGAAGCTGAGGTCATAGCCTTATCACCAAAGACTCTGATGGCCACAAACAGATTCGTGTGTGAAATTTGTCTCAAGGGTTTCCAAAGGGACCAAAACCTTCAACTCCATCGACGAGGGCACAACCTTCCATGGAAGCTGAAGCAGAGATCAAGCAAAGAAGTAAGGAAGAGGGTTTATGTGTGTCCAGAGAAGACTTGTGTCCACCACCACCCTTCAAGGGCTCTGGGGGACTTAACTGGGATTAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGTTTCATCACTCACAGGGCTTTCTGCGATGCCTTAGCAGAAGAAACAGCAAGGGTGAACGCAGCAACAAACATTAGCAACTACAGCATCATGCAAAACCCCCTGGGTTCTAACATGGCAACCCATTTTTCATCGTTTTACAAGCCAAATTCGTGTGCCGAGGAGCCAGTCCCAGGTAATCAAACATCTAAGGGGCTATCCCTTTGGATGAGTCAAACATCTCAGGCTCATCAAACAATTGCTAACAACAACTTGCATGAGTTTCATCAACTTGGGTCTGGTACTAGCCCAACCTCAATTTACTGTGGTGGAAATCCACTTGCTCCTTGCTCAAATCCACCACCCTCTAATTATCAACTAAATTGGGTGTTTGGAAATAAAGTCTCCCCCAATGGAAGCCAAGAGCTGAGTAGCACTGCTTCACTTCCACTAGTGAACAATATTGTTAAGGATAACCCAAACCTGCAACTCATAAGTGTTCCTTCCTTGTATAGTTCCCAACACCAATCCCATCAAACAACCTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAAATTGGGACAACTTCATCGGACCCATCATTATTCCTCGGGAGCATAGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAATTTTGTGGCATGTACGGTTCAAGTTCAGTACTCACAGGTCATGAGGGAGAGAATAATTATTCCGGTGATTTGTCACAAATGCCCCCTACAAAACGACGGCACGTACAGAATGAAGAGAGTGTATGGGGACAAACTAGGGATTTTCTGGGCGTTGGTGGTGCCAACCATTTGCCACCCTTCATCAACCAACGGATGGACTTAATTTGA 1383 0.4534 MLQKMDDGEISNAFPLQNPSTAASNQPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAATNISNYSIMQNPLGSNMATHFSSFYKPNSCAEEPVPGNQTSKGLSLWMSQTSQAHQTIANNNLHEFHQLGSGTSPTSIYCGGNPLAPCSNPPPSNYQLNWVFGNKVSPNGSQELSSTASLPLVNNIVKDNPNLQLISVPSLYSSQHQSHQTTSANMSATALLQKAAQIGTTSSDPSLFLGSIGLKCNSPGQDGNKFCGMYGSSSVLTGHEGENNYSGDLSQMPPTKRRHVQNEESVWGQTRDFLGVGGANHLPPFINQRMDLI 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00824 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 444 IPR031140 -
Vian11g00824 460 FunFam protein indeterminate-domain 12-like 39 107 - -
Vian11g00824 460 MobiDBLite consensus disorder prediction 13 28 - -
Vian11g00824 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Vian11g00824 460 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Vian11g00824 460 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Vian11g00824 460 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Vian11g00824 460 MobiDBLite consensus disorder prediction 1 44 - -
Vian11g00824 460 Gene3D Classic Zinc Finger 129 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00824 Vian-Chr11 8996594 8999165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00824 27 444 IDZ Gene Family AT1G03840 52.137 2.91e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g00824 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00824 K25870 - gmx:100778666 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00824 11 8996594 8999165 Vian11g00824 11 8996594 8999165 ECH