Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00821 ATGTTCAATAAGGTCCTTTTGGCTCACGGCGTTAAAAACATAACGGTGCAAGTGCCACCGTGGCCAAAACTGAGTGACCTGTGCAGTTTGATGAATACGTGGCAGATCGGGCACTTGGAAGCAAAGCACCAAGCTATAGACAACGTTGTTGATGCCATGAAGGAAGATGAGAAGAACGTTTTAGCGGCTCTTGGTCAGAGCAACAGTGATGCTTTGGTTCAATTGCTTACAACTACCTCTGTCAGAATAAGAGAGAAAAAAGTTATTGTTATATGCTTGCTTGCAGAATCTGGTAGTTACGAAAATTGGCTAGTTTTTGAGGGAGTTCTGTCACCTCTTATAAGGCTTGTTGAATCTGGTAGTGCAGTGGACTCTTTAGGTGTTAAAGTCGGGATCTTTAGGTTTGAACAAAAAGTTCCAACAGGAATAGGATCTTCTGGTGCTAAATATCCATGCAAGAGAGAGAGTCCTGAACTTGACTGGAGCAAAACCTTCGAAGAAAGAACAGAGCAGAAGAGGAGATCCAAAAATCCATGCTCTTTCACTCACACCAAACTAAAAATACAGCAAAATAACAACTCATGCCATAGCCATGCTACGTTTTCAACTGATATAACAACCATGCTTCACCGTAGCCACCAACTACTTTTGTTTCTGCTTCTCTTTCTCTCTCTAAACCCCACTCTCTCTCTAAACCAAGATGGTCTCTTCCTGCTCCAGACCAAGCTACAACTCTCCGACCCCACAAACGCCCTCTCCCATTGGAACCACCGTGACGCCACCCCATGCAACTGGACCTTCGTCACATGCGACGCCACCACCGGCGCCGTCGCCTCCCTTGATTTCAAAAACCTCCAGTTCTCCGGCCCTGTCCCCGAAGCCGCACTCTGCCGCCTTCCCTCCCTCGCTAGCCTCTCTATGGCCAACAACAACCTTACCGGCATCCTTCCCGACGCCGCGTTCTCCGCCTGCGCCACCCTCCGACAGCTCGACCTCTCCCAGAATGGCATCACCGGCCCCATCCCCTCCGCCCTCGCTCTCCTACCGGCCCTCGAAACCCTCGACCTCTCCTCCAACAACTTCTCCGGCGAGATTCCTGCGAGCTTCGGCCAGTTCCGTCAGCTCCGAAGCCTCTCCCTCGTCAGCAACCTCCTGAACGGAACCATTCCCTCTTTCCTGGGCAACGTTTCCACGCTCCAAACGCTTCATCTCGCTTACAACCTTGACTTCATCGCAGGTCACATTCCTCCTTCTTTGGGGAACCTCACGAATCTAGAGGAGCTCTGGCTAGCAGGGTGCAACCTTGTAGGCCCCATTCCTCCTTCTCTAGGAAACTTGACGAAGCTCACAAACCTCGACTTGTCCATGAACAACCTCGTCGGAAACATACCTGAACAACTCGTGTCGGGTTTGCGCAGCATTGTGCAAATCGAACTCTACCAGAACTCGCTCTCCGGCGCGTTGCCACGCGCCGCGTTCGCAAACCTTGCGAACTTGGAACGGTTCGATGCCTCCACGAACGAGTTGACTGGGACGATTCCGGACGAGTTGTGCGGGTTGAAGAAACTCGGGTCGCTGAACCTGTTCGCTAATAAACTCGAGGGAACTTTGCCTGAGAGTATAGTGAATTCGGAGAACTTGTACGACTTGAAGTTGTTCAACAACTCACTATCTGGGTCGTTGCCCAGTGGGTTGGGTGGAAACTCAAAGTTGCAGAGTTTCGACGTTTCGTTTAATCGATTCTCCGGCGAGGTTCCGGCAAGGTTGTGCGGTGGAGGAGTGTTGGAGGAGCTTATTTTGATTTACAATTCGTTTTCCGGGAGGATCCCAGACAGTCTCGGGGAATGCAAGAGTTTGAAAAGGGTTCGGTTCAGGAACAATAACCTTTCTGGGGTTGTACCAGGGGGCTTATGGGGTTTACCCCATTTGTATTTGTTGGAGCTTGTTGAGAACTCTCTTTCTGGGTCGATTTCTAATCGGATTTCCGGGGCACGGAACCTGTCAGTTTTGTTAATTTCAGGAAATAATTTTTCTGGGTCGATTCCTGAGGGGATCGGTGAATTGGTTAATCTTGGAGAGTTTGTTGCTAATAATAATAATCTTACTGGCCGGATTCCGACAAGTGTGGTTGGGTTGAGTCAGTTGGATAGGCTGGTCCTCGGAGACAATCAGCTTTTTGGAGAGATTCCTGCTGATGTTGGTGGTTGGAAGGCGCTCAATGAACTTGATTTGGCGAATAACAGATTGGATGGGAGTATTCCTAAGGAGTTAATGGACTTGCCTGCGCTTAAATATCTTGATCTTTCTAATAATCGTTTATCTGGTGTAATTCCAATTGAGCTGCAGAATATGAAGCTGAACTTGTTGAATTTGTCGAACAATCAGTTTTCTGGGGCGATTCCTCCTCTTTATGCCAATGAGTATTATAGAAATAGTTTTCTCGGAAATCCGGGGCTGTGTAGTTCTCTCTCTGGTCTGTGTCCAAGCTTGGATGAGAACGAGGGTAAGGGCAGGAAATATGTGTGGATTTTCCGGTTCATATTTGTGCTTGCTGGGATCGTGTTAATTGTTGGGGTGTCTTGGTTCTACTTCAAATTCCGGAATTTCAAGAAGATGAAAAAGGGGTTCCAGATATCAAAGTGGAGGTCGTTTCATAAGCTGGGGTTTAGTGAGTTTGAAGTTGTTAAATTGCTAACCGAGGACAATGTTATAGGGAGTGGAGCATCTGGGAAGGTTTACAAAGTTGCGCTGAGCAATGGTGAGGTGGTGGCTGTGAAGAAATTGTTCGGAGCACCTAACATGGGAAATGGATCCGTTGATTCTGAGAAGGATGGATTTGAAGTTGAGGTTGAGACACTCGGCAAGATTCGGCACAAGAATATTGTGAGATTATGGTGTTGCTGCAACAGTAAAGACAGCAAGCTCTTGGTATATGAGTACATGCCAAACGGGAGCCTAGCCGATTTGTTGCATAGTAGCAAGAAAGGCTTGCTGGATTGGCCCACGAGATATAAAATAGCTATCGATGCTGCTGAGGGGCTCTCATATCTGCATCATGATTGTGTCCCCCCTATTGTTCATAGGGATGTCAAATCTAGCAACATCTTGCTAGATGATGAATTTGGAGCAAAAGTAGCCGATTTCGGAGTTGCCAAAATTGTGAAGGGAGCCAACCAAGGTGCAGAATCTATGTCAGTGATTGCAGGATCTTATGGTTACATTGCGCCAGAATATGGTTATACTCTTCGGGTGAACGAAAAGAGTGACATATATAGTTTTGGTGTGGTGATTTTGGAGTTGGTGACTGGGAAGCCCCCTCTTGATCCAGAGTATGGGGAAAAGGATCTAGTGAAATGGGTTCACTCCACATTGGATCAGAAAGGACAGGATGAGGTGATTGATCCAAGTTTGGATGCTGAATATAGGGAAGAAATGAGGAAGGTTTTAAACGTGGGTCTTCTTTGCACTACCTCTCTTCCTATAACTCGTCCTTCAATGCGTAGAGTGGTCAAAATGCTGAAGGAAGTAACTGCACCAGTTCTTCCCAAATCCTTAAGCGGAAAACTCTCTCCTTATTTTCAGGAACTGCCCTCTAATAATGATCATCAGGGAAGCTTAGTTTGA 3624 0.4727 MFNKVLLAHGVKNITVQVPPWPKLSDLCSLMNTWQIGHLEAKHQAIDNVVDAMKEDEKNVLAALGQSNSDALVQLLTTTSVRIREKKVIVICLLAESGSYENWLVFEGVLSPLIRLVESGSAVDSLGVKVGIFRFEQKVPTGIGSSGAKYPCKRESPELDWSKTFEERTEQKRRSKNPCSFTHTKLKIQQNNNSCHSHATFSTDITTMLHRSHQLLLFLLLFLSLNPTLSLNQDGLFLLQTKLQLSDPTNALSHWNHRDATPCNWTFVTCDATTGAVASLDFKNLQFSGPVPEAALCRLPSLASLSMANNNLTGILPDAAFSACATLRQLDLSQNGITGPIPSALALLPALETLDLSSNNFSGEIPASFGQFRQLRSLSLVSNLLNGTIPSFLGNVSTLQTLHLAYNLDFIAGHIPPSLGNLTNLEELWLAGCNLVGPIPPSLGNLTKLTNLDLSMNNLVGNIPEQLVSGLRSIVQIELYQNSLSGALPRAAFANLANLERFDASTNELTGTIPDELCGLKKLGSLNLFANKLEGTLPESIVNSENLYDLKLFNNSLSGSLPSGLGGNSKLQSFDVSFNRFSGEVPARLCGGGVLEELILIYNSFSGRIPDSLGECKSLKRVRFRNNNLSGVVPGGLWGLPHLYLLELVENSLSGSISNRISGARNLSVLLISGNNFSGSIPEGIGELVNLGEFVANNNNLTGRIPTSVVGLSQLDRLVLGDNQLFGEIPADVGGWKALNELDLANNRLDGSIPKELMDLPALKYLDLSNNRLSGVIPIELQNMKLNLLNLSNNQFSGAIPPLYANEYYRNSFLGNPGLCSSLSGLCPSLDENEGKGRKYVWIFRFIFVLAGIVLIVGVSWFYFKFRNFKKMKKGFQISKWRSFHKLGFSEFEVVKLLTEDNVIGSGASGKVYKVALSNGEVVAVKKLFGAPNMGNGSVDSEKDGFEVEVETLGKIRHKNIVRLWCCCNSKDSKLLVYEYMPNGSLADLLHSSKKGLLDWPTRYKIAIDAAEGLSYLHHDCVPPIVHRDVKSSNILLDDEFGAKVADFGVAKIVKGANQGAESMSVIAGSYGYIAPEYGYTLRVNEKSDIYSFGVVILELVTGKPPLDPEYGEKDLVKWVHSTLDQKGQDEVIDPSLDAEYREEMRKVLNVGLLCTTSLPITRPSMRRVVKMLKEVTAPVLPKSLSGKLSPYFQELPSNNDHQGSLV 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00821 1207 ProSiteProfiles Leucine-rich repeat profile. 762 783 IPR001611 GO:0005515
Vian11g00821 1207 Pfam Leucine rich repeat 738 796 IPR001611 GO:0005515
Vian11g00821 1207 Pfam Leucine rich repeat 300 361 IPR001611 GO:0005515
Vian11g00821 1207 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 231 396 - -
Vian11g00821 1207 FunFam Leucine-rich receptor-like protein kinase family protein 415 515 - -
Vian11g00821 1207 SUPERFAMILY L domain-like 246 586 - -
Vian11g00821 1207 Gene3D Phosphorylase Kinase; domain 1 877 980 - -
Vian11g00821 1207 ProSiteProfiles Protein kinase domain profile. 898 1181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00821 1207 ProSitePatterns Protein kinases ATP-binding region signature. 904 927 IPR017441 GO:0005524
Vian11g00821 1207 PRINTS Leucine-rich repeat signature 760 773 - -
Vian11g00821 1207 PRINTS Leucine-rich repeat signature 739 752 - -
Vian11g00821 1207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1025 1037 IPR008271 GO:0004672|GO:0006468
Vian11g00821 1207 FunFam Receptor-like protein kinase HSL1 882 980 - -
Vian11g00821 1207 Pfam Leucine rich repeat N-terminal domain 232 271 IPR013210 -
Vian11g00821 1207 Pfam Leucine Rich Repeat 424 446 IPR001611 GO:0005515
Vian11g00821 1207 Gene3D Ribonuclease Inhibitor 470 829 IPR032675 -
Vian11g00821 1207 SUPERFAMILY RNI-like 493 802 - -
Vian11g00821 1207 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 442 1175 - -
Vian11g00821 1207 SMART LRR_typ_2 446 470 IPR003591 -
Vian11g00821 1207 SMART LRR_typ_2 712 736 IPR003591 -
Vian11g00821 1207 SMART LRR_typ_2 299 323 IPR003591 -
Vian11g00821 1207 SMART LRR_typ_2 471 495 IPR003591 -
Vian11g00821 1207 SMART LRR_typ_2 760 783 IPR003591 -
Vian11g00821 1207 SMART LRR_typ_2 496 520 IPR003591 -
Vian11g00821 1207 SMART LRR_typ_2 348 372 IPR003591 -
Vian11g00821 1207 FunFam Receptor-like protein kinase HSL1 522 829 - -
Vian11g00821 1207 Gene3D Ribonuclease Inhibitor 231 392 IPR032675 -
Vian11g00821 1207 Pfam Protein kinase domain 900 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00821 1207 Gene3D Ribonuclease Inhibitor 397 469 IPR032675 -
Vian11g00821 1207 SUPERFAMILY Protein kinase-like (PK-like) 898 1173 IPR011009 -
Vian11g00821 1207 SMART serkin_6 898 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00821 1207 Gene3D Transferase(Phosphotransferase) domain 1 981 1181 - -
Vian11g00821 1207 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 981 1188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00821 Vian-Chr11 8972377 8978116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00821 227 1207 Receptor kinase-like Gene Family AT1G28440 58.417 0.0 1117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian11g00821 Pkinase 5.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00821 - - gmx:100778128 1531.92