Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00816 ATGCTGGCGGTGTCACCTTTGAGGAGCACAAGAGATGAAGAGCAAGGGGAGATGGAGAGCTTCTCCATTGGAACTGATGACTTTGCTGACTTATCAGAAGGAAACTTGCTTGAAAGCATCAACTTTGATGACCTCTTCATGGGAATCAACGATGATGAAGATGTCTTGCCAGATCTGGAGATGGACCCTGAAATGCTGGCTGAGTTTTCCCTCAGCGAGGAATCGGAGATAGTCTCGTCAGTTTCAGTGGTAAATAACAAATCTGATGACAGGAATGAGAATAATATAGTTACTACCGAGAAACAAGATGAGGTTATAGCAGCCAATTTTTGTTCAGATTCTGGTTCCAATTCCGGGTCTAGCAGAGGGGAAGAGATAGCAAGCAAAAGTGAGGAATCAATTCATTCAGTGGTGGTGAATCCATCCCCTAAGGAAAGTGAGAAAGGAAGAAAATCATCAACGCATTCAAGGAATAATCCGCAAGGGAAGAGAAAGGTGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAGCAGCTCGGAGTGGATAAGGCTGTACCTTCAAGGATTTTGGAGATTATGGGAATTGACTGTCTCACTCGCCATAACATTGCCAGCCACCTTCAAAAATATCGATCCCATAGGAAGCATTTGCTAGCACGTGAAGCTGAAGCAGCAAGGTTGAGTCAAAGGAAACAATTCATGGGTGCAGCAAGCGTAGGTAGAGGAGGAGGAGGAAGCAAGAGAGACGTGAACCCTTGGCTTGCACCTACCATGGGTTTCCCTCACATGACACCAATGCACCATTTCAGACCTTTCCATGTATGGGGGCATCACACCATGGACCAGTCCTTCATGCACATGTGGCCTAAACATCTCCCATATTCACCGTCCCCGCCGGCATGGCCACCGCGAACGGCTCCCTCTCCGCCGCCTCCGGACCCTCTTTATTGGCACCAACATCAACGGGCTCCAAACGCACCAACCCCAGGAACACCGTGTTTTCCACCGCCTCTGACAAGCACGAGATTTGGGTCTCAAACTGTTCCGGGCATCCCTCCACACCATACAATGTTCCAAATAGTAGATCCAGGCATTGGCATCCCAGCCACCCAACCACCACCTCGACCCCTCCTCGATTTTCATCCGTCAAAGGAGAGCATAGATGCAGCTATTAGTGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGCCTTAAAGGTCCAGCCCTTGATGGTGTAATGGGTGAACTACAAAGACAAGGGATTCCCAAAATCCCTCCATCTTGTGCTTGA 1314 0.4863 MLAVSPLRSTRDEEQGEMESFSIGTDDFADLSEGNLLESINFDDLFMGINDDEDVLPDLEMDPEMLAEFSLSEESEIVSSVSVVNNKSDDRNENNIVTTEKQDEVIAANFCSDSGSNSGSSRGEEIASKSEESIHSVVVNPSPKESEKGRKSSTHSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARLSQRKQFMGAASVGRGGGGSKRDVNPWLAPTMGFPHMTPMHHFRPFHVWGHHTMDQSFMHMWPKHLPYSPSPPAWPPRTAPSPPPPDPLYWHQHQRAPNAPTPGTPCFPPPLTSTRFGSQTVPGIPPHHTMFQIVDPGIGIPATQPPPRPLLDFHPSKESIDAAISDVLSKPWLPLPLGLKGPALDGVMGELQRQGIPKIPPSCA 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00816 437 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 436 IPR044825 GO:0003700|GO:0045893
Vian11g00816 437 FunFam Two-component response regulator 161 224 - -
Vian11g00816 437 NCBIfam myb-like DNA-binding domain, SHAQKYF class 165 219 IPR006447 GO:0003677
Vian11g00816 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 221 IPR017930 -
Vian11g00816 437 MobiDBLite consensus disorder prediction 110 168 - -
Vian11g00816 437 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
Vian11g00816 437 Gene3D - 162 223 - -
Vian11g00816 437 MobiDBLite consensus disorder prediction 1 25 - -
Vian11g00816 437 Pfam Myb-like DNA-binding domain 168 217 IPR001005 -
Vian11g00816 437 MobiDBLite consensus disorder prediction 110 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00816 Vian-Chr11 8884928 8888323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00816 27 332 G2-like Transcription Factor Family AT5G44190 42.056 5.03e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian11g00816 Myb_DNA-binding 5.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00816 - - gmx:100790591 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00816 11 8884928 8888323 Vian11g00816 11 8884928 8888323 ECH