Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00814 ATGGCGTTGTTATTCAAGGATCCGTCGAAGCTTTCGGCGTATCGAGACCGAAGATTTCCCGGAACGCAAGAGGATTTTGAGCATGCCCTTCAGACTTCATCCACGGTTTACGTTGGGAACATGTCCTTTTACACAACGGAGGAGCAAGTTTACGAACTCTTCTCTCGCGCTGGGGAAATCAAGAAGATCATTATGGGTTTGGACAAGAACACCAAAACACCCTGTGGCTTCTGTTTCGTTTTATATTATTCTCGTGAAGATACTGAGGATGCTTGCAAATACATAAGTGGGACGATACTGGATGATCGTCTTATTCGTGTTGATTTTGATTGGGGGTTCCAGGATGGAAGACAATGGGGTCGTGGGAGGAGTGGTGGCCAGGTCCGGGACGAAGGAGGTTATGGGAAGCTGGTCCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGCACTGGTTCTTTGGGTTCCTTTCCACCAGTTATTCCTAGTTCCTATGGTAGACACGGTGGAGGTCATGGGCATGGACACGGTCATGGTGGTTCTCATCGGCACGGTAGAGATTACTATAGAAAGAGACACCGAGATGATGATCGCCACACACACGAGTCCTCAAAAAGAACTTCAGATCACGATTCTCGGAGGAACACTGATCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGATGATGAGGAGGAAGATGATAGAAAAAGACGGGCTTAA 747 0.4685 MALLFKDPSKLSAYRDRRFPGTQEDFEHALQTSSTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRLIRVDFDWGFQDGRQWGRGRSGGQVRDEGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVIPSSYGRHGGGHGHGHGHGGSHRHGRDYYRKRHRDDDRHTHESSKRTSDHDSRRNTDHESRPEKNPRFRESGDSDDEEEDDRKRRA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00814 248 MobiDBLite consensus disorder prediction 154 248 - -
Vian11g00814 248 SUPERFAMILY RNA-binding domain, RBD 23 134 IPR035979 GO:0003676
Vian11g00814 248 CDD RRM_NCBP2 36 113 IPR034148 -
Vian11g00814 248 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 246 IPR027157 GO:0000339|GO:0005846|GO:0045292
Vian11g00814 248 SMART rrm1_1 35 108 IPR000504 GO:0003723
Vian11g00814 248 MobiDBLite consensus disorder prediction 173 191 - -
Vian11g00814 248 FunFam Nuclear cap-binding protein subunit 2 4 141 - -
Vian11g00814 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Vian11g00814 248 Gene3D - 5 247 IPR012677 -
Vian11g00814 248 MobiDBLite consensus disorder prediction 192 248 - -
Vian11g00814 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00814 Vian-Chr11 8872547 8875899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00814 35 109 Eukaryotic Initiation Factors Gene Family AT2G23350 26.667 5.98e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00814 K12883 - gmx:100776217 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00814 11 8872547 8875899 Vian11g00814 11 8872547 8875899 ECH