Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00809 ATGAAACTGCCACATACCCTCTTTTGCATGTTCATCCCAAATGCTACAATGCCACGCACCTCCTTCACTGTCCCTACATTCCATCCTTCTTACCTTTTCTCTCTCTTCTCTCTTTCTCTCTCTGCATCTACCCTATATAACTCACAACACCCTTTTCTTTCCCTCCACATTCACTCACTCTTTCTTTCTTCTTATTCCCTTTCTCTTTCATCATTCAAGGTTCTCAACATGAGCAGTGTCTGTTCCGACCATCACAAGTTTCACCCCTCTCATCAATTCCTCTCTCCCAACAAAACCCTCAGAGAGATTGACGTCCCTCCAAGGAAGCTCCTCACTTGCCGTGCTGCTGCTGCATGCGGTGGCTCTGAGTTGTTTTCTGCCGACACCATGCTGCAAAAGTTCCTTCCTTCCAACAACCTTGATGACTCCGATGAGGACGACCCTTACTCCGCCGACCACTTCAGGATGTTTGAGTTCAAGGTCCGCCGGTGCACTCGCAGCAGGAGTCATGACTGGACTGACTGCCCTTTTGCTCACCCCGGAGAAAAGGCTCGCCGCCGTGACCCTCGGCGGTATCACTACTCGGGAACTGTGTGTCCTGAATATCGTCGTGGAGGGTGCAATCGTGGTGATGCATGTGAATTCGCTCATGGAGTATTTGAATGCTGGCTGCACCCTGCAAGATACAGGACAGAGGCCTGTAAGGATGGAAAGAACTGCAAGAGAAAGGTTTGTTTCTTTGCACACACACCTCGCCAGCTGAGAATTTTACCGGTAACTTCTCCTTCTTCGAATGACATTTCATGCAAGAAGAACATTAACAATCTCTTCAACCATGTTTCAAGATCCAACAACAACGGCTGTTGTGTTTTTTGCCATTGTGTTTCTTCTTCCTCTTCTTCTTCCACCGCTTCTCCAACTTCAACCCTCTTCAACATGTCTCATTACTCGCCACCGCTATCTCCATCCTCCTCCTCCTCCTCACCACCTCCTTCTCCCTTGAAACCCCGAAAAGGGGTTTCTGTTTCTCCAATTTCCCTATATGGTGCTGCGAATGTAAACCCTCGTCATGGGGTGGTGAGTTACAAAGAAGCCTTCGCTGAATTTGTGAACTCCTTGGAGGGGTTGAGTTTGAACGAGGGTTCTCCTGTTTCTGGTGCCAAAACATTGAACTTGCCTTGGATTGATGTTTCTCTGAACTGTGAGGAACAACAGCAGCAACAACGACAACCGCTCATTGCTTCTTCTTTTGGCTGCGAAGATCAGCAGAAGTTTATTTTTTCACCATCCTCCACTCAGACACACACAAATGTTGCGTTTTGCAGCAACAGATTCACAGGCAACAACAACAACAACGTTGTCGGTGCTGACTCAAATGTCCCAGATCTTGCGTGGGTAAACGAGTTGCTGATGTAG 1416 0.4788 MKLPHTLFCMFIPNATMPRTSFTVPTFHPSYLFSLFSLSLSASTLYNSQHPFLSLHIHSLFLSSYSLSLSSFKVLNMSSVCSDHHKFHPSHQFLSPNKTLREIDVPPRKLLTCRAAAACGGSELFSADTMLQKFLPSNNLDDSDEDDPYSADHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCNRGDACEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSPSSNDISCKKNINNLFNHVSRSNNNGCCVFCHCVSSSSSSSTASPTSTLFNMSHYSPPLSPSSSSSSPPPSPLKPRKGVSVSPISLYGAANVNPRHGVVSYKEAFAEFVNSLEGLSLNEGSPVSGAKTLNLPWIDVSLNCEEQQQQQRQPLIASSFGCEDQQKFIFSPSSTQTHTNVAFCSNRFTGNNNNNVVGADSNVPDLAWVNELLM 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00809 471 MobiDBLite consensus disorder prediction 323 337 - -
Vian11g00809 471 PANTHER UNKEMPT FAMILY MEMBER 91 470 IPR045234 -
Vian11g00809 471 Gene3D - 193 257 - -
Vian11g00809 471 MobiDBLite consensus disorder prediction 319 339 - -
Vian11g00809 471 ProSiteProfiles Zinc finger C3H1-type profile. 194 220 IPR000571 GO:0046872
Vian11g00809 471 SMART c3hfinal6 228 251 IPR000571 GO:0046872
Vian11g00809 471 SMART c3hfinal6 193 219 IPR000571 GO:0046872
Vian11g00809 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 198 218 IPR000571 GO:0046872
Vian11g00809 471 FunFam Zinc finger CCCH domain-containing protein 66 151 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00809 Vian-Chr11 8804428 8805843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00809 139 255 C2H2 Transcription Factor Family AT5G07500 64.957 5.17e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian11g00809 zf-CCCH 2.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00809 K23047 - gmx:100787049 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00809 11 8804428 8805843 Vian11g00809 11 8804428 8805843 ECH