Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00803 ATGGTTGCCACTCAAAGATTGGAGTTTTCTTTGTGCAAGAAGAGGAGGGGGCTTGAATTTTTGTTTCAGATTGCAGTTGGGTGGTGGGTGGTTCTACTGTTAGTTAATCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGATGAGGTGAACTCACTTCATTTGTATGTTATTGATATGTTACCTTTCTCAGCAGCTGTTTACAAGAAAGGACGAGAGCAACTTAGCTTTGGTCGGTTCATGTTTCATGTAAGTACCATGCTGAACATATGGACTTGGAAATTTTTGGATACCACAAATGGCTCTTCCAGATTTCCTGACATCAGAAAAACAAAGGGCAATTCTGTAATTGAGTTAGTTAGTACTCCGACAAAGATAAGTGGAGTGCATTACGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAATACGATGTCAGTGGTGCCCAAGTCAGAATAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGAATGGTTGCCAACAGGCCCAGTTCTGTTGAACCTGCTGAGGGAGATGGCCTGAGGCCATTGAAGACCTGCAGGAGTGGAAAAGAAGGGGAGTTGAATCAGAATGAAGATTACATTTTATCTAATCCATATCATCTGATTTCAAGGACAATGGATAGGTACTGCAAGATTCTTCAAGAGATAAAATGTGGAGAAGAAAACATTGTAATTTTTCTTAATACCACTCTGATTCATGATGCGGAGAAACATTGTAATATCGAAATTGCTGCTCAGGTTTCACGCTTGCCATCATCAAATAACGAAGTTGAACATGATCATTTTCATTTAGAAGGGTTAATGGAGAGCCCCTCCGCGGATGATGATGGGGACTGCTTCTCACCATTACTGCTAAATGCAACGTCTGTCAAAATTGAGGGTGCTGCTAAGGTTTCAATACTAATGATTGGTCAGCAAGCAATTATGGATGCCTATCTTTGCCTTTTACATCTCACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCAATCTGGAAGGCAGGTAGGCCTTTGAGTAATGGTGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATATTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATGTACTCTTTCTGGATACCGCAGATAATCACCAATGTTATTCGCGATTCGCGTAAACCCTTGCATCCTCATTATATCTTAGGGATAACCGTCACTAGGCTGGCAATCCCATTATATATCTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAGAGCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGAAACAAGACAGGCTACAGACTGTGTGATTTGCATGACAGCCATTGATCTTTCCCAGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTTTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACATGCCGGCGCCCATTACCCCCTGCCTAG 1737 0.418 MVATQRLEFSLCKKRRGLEFLFQIAVGWWVVLLLVNPVAGLRPLRERTRSWDDEVNSLHLYVIDMLPFSAAVYKKGREQLSFGRFMFHVSTMLNIWTWKFLDTTNGSSRFPDIRKTKGNSVIELVSTPTKISGVHYVQGVVIFHDVFDNEYDVSGAQVRIEGVYIWPFRQLRMVANRPSSVEPAEGDGLRPLKTCRSGKEGELNQNEDYILSNPYHLISRTMDRYCKILQEIKCGEENIVIFLNTTLIHDAEKHCNIEIAAQVSRLPSSNNEVEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKAGRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQETRQATDCVICMTAIDLSQRSNDCMVTPCDHFFHFGCLQRWMDIKMECPTCRRPLPPA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00803 578 SMART ring_2 528 571 IPR001841 -
Vian11g00803 578 SMART ringv_2 527 572 IPR011016 GO:0008270
Vian11g00803 578 SUPERFAMILY RING/U-box 510 577 - -
Vian11g00803 578 ProSiteProfiles Zinc finger RING-type profile. 528 572 IPR001841 -
Vian11g00803 578 FunFam E3 ubiquitin-protein ligase, putative 514 578 - -
Vian11g00803 578 Pfam Ring finger domain 527 572 IPR001841 -
Vian11g00803 578 CDD RING-H2_TUL1-like 522 577 - -
Vian11g00803 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 578 IPR013083 -
Vian11g00803 578 PANTHER RING ZINC FINGER PROTEIN 179 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00803 Vian-Chr11 8723956 8733087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00803 521 577 C3H Transcription Factor Family AT2G17450 35.088 4.15e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00803 K23788 - gmx:100780140 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00803 11 8723956 8733087 Vian11g00803 11 8723956 8733087 ECH