Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian11g00784 | ATGGCCTTAAACCAGTATTTTGAGGACGTTGTGCCCCAGTTGGATTACTTTGAAGATATATCATCTCTGAAAACATGGAAATGTGCTGGTGAAGATGATATTGCAGATTCGGATAAAAAAGCCTCCAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTTGTCACTCTTTGTGGTCACCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAACTTCCAAAGTGCCTCCTCCGAAAATGAAGAGAAGCAACAATGTCCAGTGTGCAAATCAGAAATCTCACAGTCATCACTTGTTCCATTATATGGCCGTGACCAAACCACACTACCCTCCAAAGGAAAAGGTCACCAAGTAGGGATTGTGATACCAAGAAGACCCCTTGGTCCTTCATGGCTGACCAACTCATCAAGATCACGTGATTCTGAAACTGTTTCCCGACATACTTCACATGTTTATCACCGCCATTATCCCAATCATCCTCAACAATTCAACTCAATTCCTGGCAGTTACCCTTCATCAATGTTCAACACTGGTGGTTCGCTAGCCAATGCATTTGATCCAACATACGGAGTCTTTGGAGAGATGATATATGCAAGGGTCTTTGGAAACCAAATGACTAACATCTACACATACCCGAATTCATATGATCTTTCAGGGAACAGTAATCCAAGGGTAATAAGGCACTTAATGCAAGTTGATAGGTCACTCAATAGAATCACATTTTTCCTCCTTTGTTGCGTAGTTTTGTGTCTTCTCTTATTCTGA | 777 | 0.4234 | MALNQYFEDVVPQLDYFEDISSLKTWKCAGEDDIADSDKKASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFQSASSENEEKQQCPVCKSEISQSSLVPLYGRDQTTLPSKGKGHQVGIVIPRRPLGPSWLTNSSRSRDSETVSRHTSHVYHRHYPNHPQQFNSIPGSYPSSMFNTGGSLANAFDPTYGVFGEMIYARVFGNQMTNIYTYPNSYDLSGNSNPRVIRHLMQVDRSLNRITFFLLCCVVLCLLLF | 258 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian11g00784 | 258 | FunFam | E3 ubiquitin-protein ligase RMA1H1 isoform A | 30 | 107 | - | - | |
Vian11g00784 | 258 | ProSitePatterns | Zinc finger RING-type signature. | 62 | 71 | IPR017907 | - | |
Vian11g00784 | 258 | SMART | ring_2 | 47 | 93 | IPR001841 | - | |
Vian11g00784 | 258 | Pfam | Zinc finger, C3HC4 type (RING finger) | 47 | 93 | IPR018957 | GO:0046872 | |
Vian11g00784 | 258 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 116 | IPR013083 | - | |
Vian11g00784 | 258 | SUPERFAMILY | RING/U-box | 46 | 100 | - | - | |
Vian11g00784 | 258 | MobiDBLite | consensus disorder prediction | 135 | 154 | - | - | |
Vian11g00784 | 258 | ProSiteProfiles | Zinc finger RING-type profile. | 47 | 94 | IPR001841 | - | |
Vian11g00784 | 258 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 21 | 255 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian11g00784 | Vian-Chr11 | 8464325 | 8465101 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian11g00784 | 31 | 258 | C3H Transcription Factor Family | AT4G28270 | 36.864 | 1.31e-40 | 137 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian11g00784 | K10666 | - | gmx:100785491 | 412.92 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian11g00784 | 11 | 8464325 | 8465101 | Vian11g00784 | 11 | 8464325 | 8465101 | ECH |