Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00760 ATGCATCGTTGTTGTGGGGACTCCCAGGGTCACATGATGGGCACCTGCACATGCACCATGCTTCACATCGAACACGAAGTCTATTCCTCCTACATGTCCTCTCCTTTCGTCGATTGTACGCTCTCCCTCGGTACCCCTTCCACGCGTTTCACCGAAGGCGATGAGTTACGAAAACGCCACGAACCTCACTATTCCGTCACCAACTTCTGCTGGGACTTGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTTAAAGTTATGGGTCGAACAGGGTCTAGAGGTCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAAAACAGGCACATCATGAGGAATGTGAAAGGACCTGTGAGAGAAGGAGACATTCTCACCCTACTTGAGTCCGAAAGAGAAGCAAGAAGGTTGCGCTAG 417 0.5012 MHRCCGDSQGHMMGTCTCTMLHIEHEVYSSYMSSPFVDCTLSLGTPSTRFTEGDELRKRHEPHYSVTNFCWDLMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00760 138 Pfam Ribosomal protein S28e 77 137 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vian11g00760 138 CDD S1_S28E 79 138 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vian11g00760 138 Hamap 30S ribosomal protein S28e [rps28e]. 74 138 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vian11g00760 138 ProSitePatterns Ribosomal protein S28e signature. 129 137 IPR028626 -
Vian11g00760 138 PANTHER 40S RIBOSOMAL PROTEIN S28 74 138 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vian11g00760 138 SUPERFAMILY Nucleic acid-binding proteins 74 138 IPR012340 -
Vian11g00760 138 FunFam 40S ribosomal protein S28 71 138 - -
Vian11g00760 138 Gene3D - 72 138 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00760 Vian-Chr11 8124574 8129353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00760 74 138 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 1.12e-34 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00760 K02979 - gmx:100811085 103.99