LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian11g00724	ATGCCGTATTGTAATTGCTTGCCGGGTTTTGAGCCAAAGTCACTGTCTGATTGGAATCTGGAGGATCATTCAGGTGGGTGTGAAAGGAGAACCAAGTTGCAGTGTGAGAATTTGAATCCCTCTAAAGGGGATAAGGATAGGTTTCTTGCGATTCTCAACATGGCGTTACCTAAACATGCACAATCTGTGGGATCAGGGAAGGCAGGGGAATGTGAATCAACTTGCTTAAACAACTGTTCCTGCACGGCTTATGCATATAACAGTAGGGGGTGTTTCATTTGGATTGGCAACCTTTTGAATCTGCAGCAGCTATCTTTAGATGATAGTAGCGGAGAAACTTTGTATCTCAAACTTGCAGCATCTGAGTTTCATGATGATGAAAGCAGCAAGGGAACTGTTATTGGTGTGGCCGTGGGATTGGTTGTTGGCATTGGGGTTCTCTTGGCCATTCTTTTGTTTTTCGTGATCAGGCGAAGGAAGAGAATGGTTGGAATAGGAAAGCCTGTGGAGGGTACGTTGGTGGCATTTGGGTACAGAGATTTGCAAAATGCAACGAGGAATTTCTCTGAGAAATTGGGAGGAGGAGGCTTTGGTTCTGTTTTCAAAGGAACTTTGGGGGATTCAAGTGTTGTGGCAGTGAAAAAGTTGGAGAGTATTAGCCAAGGAGAAAAACAGTTCCGAACGGAAGTTAGCACAATAGGGACAGTGCAACATGTTAATCTTGTTAGGCTGCGTGGATTCTGCTCTGAAGGCGCAAAAAAGCTGCTAGTTTATGATTACATGCCAAATGGCTCCTTGGATTTCCATTTGTTCCACAACAATAGCCGTAAGGTGTTGTTGGATTGGAAAATGAGATACCAAATTGCGTTAGGAACAGCAAGGGGACTAAATTACCTTCACGAGAAATGTAGAGATTGTATTATACATTGTGATGTGAAGCCAGAAAACATTCTCCTAGATACTGAATTTTGTCCCAAGGTTGCAGACTTTGGCCTGGCTAAGCTTGTTGGAAGGGATTTCAGCAGGGTTCTCACAACCATGAGAGGAACAAGAGGTTATCTTGCTCCAGAGTGGATTTCTGGGGTGCCTATCACTGCCAAAGCTGATGTGTACAGCTATGGAATGATGCTTTTTGAGTTTGTATCCGGTAGGAGGAACTCTGAGCCATCAGAAGATGGCCAATTTACCTTCTTTCCAACCTTTGCGGCAAATGTTGTTGTCCAAGGTGGCCCTGTTGTTACCCTTTTGGACCCTGTTTTGGAGGGCAATGCTGAGATTGAGGAGGTGACTCGAACAATAAAAGTTGCTTCGTGGTGTGTCCAAGACAATGAGGCTCACCGGCCAAGCATGGCTCAGGTGGTTCAAATCCTTGAGGGGATCTTAGAGGTGAATATGCCTCCAATTCCAAGATCCCTTCAAGTGTTTGTTGACAACCAGGAGAATTTAGTCTTCTACACCGACTCAAACTCCACACACAGTTCACAGGAGAAGAGCAACGTTTCTACGACCTCCTCCTCTCAAGCCAGAAGTAACATCTCTTTAGCAAGCTCCAAGTCCTCGGGAGGAGAAAATTAG	1575	0.4489	MPYCNCLPGFEPKSLSDWNLEDHSGGCERRTKLQCENLNPSKGDKDRFLAILNMALPKHAQSVGSGKAGECESTCLNNCSCTAYAYNSRGCFIWIGNLLNLQQLSLDDSSGETLYLKLAASEFHDDESSKGTVIGVAVGLVVGIGVLLAILLFFVIRRRKRMVGIGKPVEGTLVAFGYRDLQNATRNFSEKLGGGGFGSVFKGTLGDSSVVAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGAKKLLVYDYMPNGSLDFHLFHNNSRKVLLDWKMRYQIALGTARGLNYLHEKCRDCIIHCDVKPENILLDTEFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVPITAKADVYSYGMMLFEFVSGRRNSEPSEDGQFTFFPTFAANVVVQGGPVVTLLDPVLEGNAEIEEVTRTIKVASWCVQDNEAHRPSMAQVVQILEGILEVNMPPIPRSLQVFVDNQENLVFYTDSNSTHSSQEKSNVSTTSSSQARSNISLASSKSSGGEN	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian11g00724	524	ProSitePatterns	Protein kinases ATP-binding region signature.	192	215	IPR017441	GO:0005524
	Vian11g00724	524	Pfam	PAN-like domain	43	100	IPR003609	-
	Vian11g00724	524	FunFam	Serine/threonine-protein kinase	261	465	-	-
	Vian11g00724	524	SMART	ntp_6	43	118	IPR003609	-
	Vian11g00724	524	MobiDBLite	consensus disorder prediction	487	524	-	-
	Vian11g00724	524	CDD	PAN_AP_plant	31	119	-	-
	Vian11g00724	524	FunFam	Receptor-like protein kinase 4	154	260	-	-
	Vian11g00724	524	CDD	TM_EGFR-like	128	161	-	-
	Vian11g00724	524	ProSiteProfiles	Protein kinase domain profile.	186	461	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian11g00724	524	Gene3D	Transferase(Phosphotransferase) domain 1	261	467	-	-
	Vian11g00724	524	ProSiteProfiles	PAN/Apple domain profile.	35	119	IPR003609	-
	Vian11g00724	524	Gene3D	Phosphorylase Kinase; domain 1	155	260	-	-
	Vian11g00724	524	Pfam	Protein kinase domain	189	455	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian11g00724	524	PANTHER	OS07G0415500 PROTEIN	2	469	-	-
	Vian11g00724	524	CDD	STKc_IRAK	192	460	-	-
	Vian11g00724	524	SUPERFAMILY	Protein kinase-like (PK-like)	172	484	IPR011009	-
	Vian11g00724	524	SMART	serkin_6	186	456	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian11g00724	524	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	307	319	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian11g00724	Vian-Chr11	7699959	7701533	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian11g00724	142	467	Receptor kinase-like Gene Family	AT5G20050	41.389	8.84e-82	260

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Vian11g00724		Pkinase	3.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian11g00724	-		-	gmx:100810583	867.84