LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian11g00723	ATGTCCCTCGGCTCCCGCAGCGACTGGAACTCCATCGCAAGTTACTCGAGCTTGGACGGAACGACAAGCTCTGAGGTGACTTGTGGATGTGCTGTTGGAGTTGCTGCTGCATTTAGAGCTCCAATTGGTGGTGTGTTCTTTGCTTTGGAAGAGACCAATGGATCCACTCCTGTGAGAGGAGAAACAGTGGCCAAGTTGAAGGTGGCAATCAATGATTTTGGACGAATTGGCAGAAACTTTCTTCGTTGTTGGCACGGCCGAAAAGACTCACCCCTTGATGTTGTTGTTGTCAACGATAGTGGTGGTGTCAAGAATGCTTCACACCTGTTGAAATATGATTCTATGCTGGGAACATTTAAAGCAGATGTGAAGATACTAGACAATGAAACCATCACTGTTGATGAGGATTATTCCTTTGTAGAGTTATTTCCAATGGCTATTATTGGAGTTATTGGAGGTCTACTAGCTTACTCTTTATATTACCACTTGGCAATGAAATCATGTCTTGTATCCATTTTAACGTCACTGATTTCATTTGGCTTGCCACTTCTAAGAAAATGTACTCCTTGCCCTGAATCTGATTCTGCATCTGGTATTGAATGTCCTCGACCTCCTGGAATGATTGATTATGACTTAGCACTTCTCTTCCAACCAATGTTGATGATTGGAATCAGCATTGGAGTTGACTTCTATGTCATTTTTCCTGAGTGGATGCTAACCGTTTTGCTAATAATACTTTTCGTTGGTAAGAATCAGGTGGCAAGTGCTACATCCATTTTGGCAATGCTATTTTCAGCATCTATAGCTATGGTGGAATATTACCTTCTCAAACGTTTCCCTGTTCCTTATGGTGTAGCGACTGTAGCTTCAGTTGTTGGACAGTATTTGGTGAGAAAGGTGGTTGCCATATTGGGGAGAGCATGTAAATGTAAAATGGTTTTATTTGGTGACATGTCAGGTGGAGTAGGAGTTGCACATATGATCGAAAAGATTGAACGCAAAGAGCACATGGGATTTGGAAACCTCTGCATGTACACGGCTAAAAATTAA	1050	0.421	MSLGSRSDWNSIASYSSLDGTTSSEVTCGCAVGVAAAFRAPIGGVFFALEETNGSTPVRGETVAKLKVAINDFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKILDNETITVDEDYSFVELFPMAIIGVIGGLLAYSLYYHLAMKSCLVSILTSLISFGLPLLRKCTPCPESDSASGIECPRPPGMIDYDLALLFQPMLMIGISIGVDFYVIFPEWMLTVLLIILFVGKNQVASATSILAMLFSASIAMVEYYLLKRFPVPYGVATVASVVGQYLVRKVVAILGRACKCKMVLFGDMSGGVGVAHMIEKIERKEHMGFGNLCMYTAKN	349

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian11g00723	349	Gene3D	Clc chloride channel	9	67	-	-
	Vian11g00723	349	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	65	137	IPR036291	-
	Vian11g00723	349	PRINTS	Chloride channel signature	293	309	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Vian11g00723	349	PRINTS	Chloride channel signature	31	50	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Vian11g00723	349	SUPERFAMILY	Clc chloride channel	26	290	IPR014743	-
	Vian11g00723	349	Pfam	Voltage gated chloride channel	24	159	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Vian11g00723	349	Gene3D	-	68	142	-	-
	Vian11g00723	349	PANTHER	CEREBLON	252	343	-	-
	Vian11g00723	349	SMART	gp_dh_n_7	66	168	IPR020828	GO:0051287
	Vian11g00723	349	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	67	135	IPR020828	GO:0051287

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian11g00723	Vian-Chr11	7680115	7688000	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian11g00723	134	207	Ion Channels	AT5G26240	52.128	2.02e-22	96.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian11g00723	K05298		-	vum:124831042	171.014