Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00721 ATGAAGAACTGCGAGCTCTGCAAGGTTCTGGCTCGGACCTTCTGCGAGTCTGACCAGGCCAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGTGCCAACTTCCTCGTCGCCAGACACACGCGCACGCTCCTCTGCCACACCTGCCAGTCACCCACGCCCTGGAAGGCCTCCGGCGCCGCCCTCGGCAACACCGTCTCCCTCTGCGAGAGGTGCGCCGGTGGAACCGCCGAACAAGGTCAGGAGAGTCAAGGAGGCAATGACGACGACGTAGACACAGACGAAGATGACTACGACGACGATGATGAGACCGACGACGAAGTCGCCGCTGACGAAGACGGAGACAACCAGGTTGTCCCTTGGTCCTCCGCGCCTCCGCCACCTGCTCCGAGCTCTTCCAGCAGCGAAGAGTCGGTTAGCCGGTGCAACAACGCCTACGAGGATGTTTCGACCACATTGAAACGACGTCGTGAGGATAATGATTTCGAGTGTTCGGATTCGAACAATTGGGGTTGTCAACTGAGCGAAGTAGAGAGAGGAGGTTGGTTGGTTCGGTTGCGGCGGCGAACCGCCGCCGAAGATGACGGTCTTGCTGTTGAGCGACGGAGTGGTGGGATGGTGGCTCCCTACGGTTGCGGTGATGATGATAGAGCCTCTGAAGACGTTTGA 669 0.5964 MKNCELCKVLARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHTCQSPTPWKASGAALGNTVSLCERCAGGTAEQGQESQGGNDDDVDTDEDDYDDDDETDDEVAADEDGDNQVVPWSSAPPPPAPSSSSSEESVSRCNNAYEDVSTTLKRRREDNDFECSDSNNWGCQLSEVERGGWLVRLRRRTAAEDDGLAVERRSGGMVAPYGCGDDDRASEDV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00721 222 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Vian11g00721 222 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Vian11g00721 222 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vian11g00721 222 CDD Bbox1_BBX-like 4 45 - -
Vian11g00721 222 MobiDBLite consensus disorder prediction 77 143 - -
Vian11g00721 222 MobiDBLite consensus disorder prediction 85 113 - -
Vian11g00721 222 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00721 Vian-Chr11 7655930 7656796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00721 2 185 C2C2-CO-like Transcription Factor Family AT5G54470 45.263 7.93e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian11g00721 zf-B_box 6.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00721 - - gmx:100801024 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00721 11 7655930 7656796 Vian11g00721 11 7655930 7656796 ECH
Vian11g00721 11 7655930 7656796 Vian5g00864 5 29233475 29234295 PCT