Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00719 ATGTATCTGATGGTACGGAGTTCAGATCGAGCAAGCTCCCGAATTCAGGAGAGCTTGTATGAGAGTGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTTCCCTTTTACACTTTTGCAAGCATTCTCGCAGCTACAGATAATTTCTCGGATTCTAACAAGCTCGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAACGTTTCCTGGAGGTCAAGAAATAGCTGTAAAGAGACTTTCAAGTGTTTCCACTCAAGGCCTGCAAGAATTCAAAAATGAGGTTATTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTGAGGGGCTACTGCATAAAAGGGGATGAAAAAATCTTACTTTATGAATACATGCCAAATAAGAGCTTGGACTCATTTATATTTGACCGTAGTCGAACTATACTGTTGGATTGGCCGATGCGGTTTGAGATAATAGTAGGCATAGCACGAGGCATGCTATACCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGACATGAAAACCAGCAACGTTCTCTTAGACGAGGAAATGAATCCAAAGATATCTGACTTTGGTCTTGCCAAAATATTTGGAGGAAAAGAAACGGAAGCAAGTACAGGGAGAGTGATGGGAACCTATGGATACATGGCTCCAGAGTATGCTTTGGATGGACTTTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGGGTGGTCCTACTGGAGATTCTTAGTGGAAAAAGGAACACAGGATTCTATGAGTCCAATCAAATTTCTAGCCTTTTGGGTTATGCATGGAAGTTATGGTCAGATAACAAGCTATTGGATTTAATGGATTCTAGCCTTGGTGAAACATGCAACGAAAATCAATTTTTCAAATGTGCAGTTGTTGGATTATTGTGCATACAAGATGAACCAAGTAATCGACCCACTATGTCAAATGTTTTGTACATGCTTGACGTAGAGACAACAACCATGCCAATTCCCACCCAGCCAACATTTTTTATGAACAAGCGTTATTCAAGTTCACCTTCTTCTTCTAGTAAACCAGAAACAAGTCTGCAATTTGACAGCAGTTACGAACAAGGTCGATAG 1131 0.4005 MYLMVRSSDRASSRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPFYTFASILAATDNFSDSNKLGRGGYGPVYKGTFPGGQEIAVKRLSSVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRSRTILLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDMKTSNVLLDEEMNPKISDFGLAKIFGGKETEASTGRVMGTYGYMAPEYALDGLFSVKSDVFSFGVVLLEILSGKRNTGFYESNQISSLLGYAWKLWSDNKLLDLMDSSLGETCNENQFFKCAVVGLLCIQDEPSNRPTMSNVLYMLDVETTTMPIPTQPTFFMNKRYSSSPSSSSKPETSLQFDSSYEQGR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00719 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Vian11g00719 376 CDD STKc_IRAK 66 332 - -
Vian11g00719 376 Gene3D Transferase(Phosphotransferase) domain 1 136 340 - -
Vian11g00719 376 SUPERFAMILY Protein kinase-like (PK-like) 45 363 IPR011009 -
Vian11g00719 376 Pfam Protein tyrosine and serine/threonine kinase 63 328 IPR001245 GO:0004672|GO:0006468
Vian11g00719 376 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 362 - -
Vian11g00719 376 Gene3D Phosphorylase Kinase; domain 1 33 135 - -
Vian11g00719 376 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 136 339 - -
Vian11g00719 376 ProSiteProfiles Protein kinase domain profile. 60 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00719 376 MobiDBLite consensus disorder prediction 351 376 - -
Vian11g00719 376 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 27 135 - -
Vian11g00719 376 SMART serkin_6 60 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00719 Vian-Chr11 7635219 7636733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00719 50 373 Receptor kinase-like Gene Family AT4G23140 53.939 2.65e-133 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian11g00719 PK_Tyr_Ser-Thr 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00719 - - var:108332879 727.243