Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00713 ATGCACATGTTAGCGAAAGCACATAGTAAGGGGGATGGAACCAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCTGTGATGATGCGGATAAACCAGTTCGCAAAGTTCCTGCCAAGGGATCAAAAAAAGGGTGTATGAAAGGTAAAGGTGGGCCTGAGAACTCGCGGTGTAATTACAGAGGTGTTAGGCAGAGGACTTGGGGAAAGTGGGTTGCTGAAATCAGAGAGCCGAACAGAGGGAAAAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCAGCGAGGGCAATGTATGGATCCTGTGCCCGTCTTAACTTTCTCAATGTTTCTGTTTCCAGTTTCTCTGAGGAATCCTCCAAAGATTCTCCATTGGCGAATCATTCTGGTTCCTCAAAGGCAGTGTCTACAAATGAATCCATGGTTTCACTTAGTAACTCTAAGGGGGGAGGAGCAGAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCTTAAGTGTAAAACACGAGAACGGTGAAGGTGAATCAGGGATAAGTTCATCTCCTCCTTCTTCTTCATAG 606 0.462 MHMLAKAHSKGDGTKSLAKILAKWKEYNAQLDSCDDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGKRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFLNVSVSSFSEESSKDSPLANHSGSSKAVSTNESMVSLSNSKGGGAEEDVDMEPISLSLSVKHENGEGESGISSSPPSSS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00713 201 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Vian11g00713 201 MobiDBLite consensus disorder prediction 42 65 - -
Vian11g00713 201 MobiDBLite consensus disorder prediction 132 162 - -
Vian11g00713 201 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Vian11g00713 201 CDD AP2 65 122 IPR001471 GO:0003700|GO:0006355
Vian11g00713 201 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Vian11g00713 201 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Vian11g00713 201 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Vian11g00713 201 MobiDBLite consensus disorder prediction 132 201 - -
Vian11g00713 201 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700|GO:0006355
Vian11g00713 201 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Vian11g00713 201 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Vian11g00713 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00713 Vian-Chr11 7583002 7583607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00713 10 122 AP2-EREBP Transcription Factor Family AT2G40350 65.812 1.53e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian11g00713 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00713 - K09286 gmx:100527471 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00713 11 7583002 7583607 Vian5g00874 5 29376261 29376818 PCT